 |
 |
 |
 |
 |
||||||||||||||||||||||||
 |
 |
 |
 |
 |
 |
|||||||||||||||||||||||
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||||
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||||
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
||||||||||||||||||
 |
 |
 |
 |
|||||||||||||||||||||||||
Bibliography | ||||
This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
If your papers on this topic are missing from our bibliography, this was not our intention. Please contact us and send pdfs of your missing papers. | ||||
Search bibliography | ||||
| Fabry CM, Rosa-Calatrava M, Conway JF, Zubieta C, Cusack S, Ruigrok RW, Schoehn G. "A quasi-atomic model of human adenovirus type 5 capsid." Embo J. 2005; 24(9): 1645-54. PMID: 15861131 | ||||
| Fairbrother WJ, McDowell RS, Cunningham BC. "Solution conformation of an atrial natriuretic peptide variant selective for the type A receptor." Biochemistry. 1994; 33(30): 8897-904. PMID: 8043577 | ||||
| Falk S, Ravaud S, Koch J, Sinning I. "The C Terminus of the Alb3 Membrane Insertase Recruits cpSRP43 to the Thylakoid Membrane." J Biol Chem. 2010; 285(8): 5954-62. PMID: 20018841 | ||||
| Fang JY, Chen JP, Leu YL, Wang HY. "Characterization and evaluation of silk protein hydrogels for drug delivery." Chem Pharm Bull (Tokyo). 2006; 54(2): 156-62. PMID: 16462057 | ||||
| Fan S, Wei Z, Xu H, Gong W. "Crystal structure of human synbindin reveals two conformations of longin domain." Biochem Biophys Res Commun. 2009; 378(3): 338-43. PMID: 18466758 | ||||
| Farabaugh PJ. "Sequence of the lacI gene." Nature. 1978; 274(5673): 765-9. PMID: 355891 | ||||
| Fares C, Libich DS, Harauz G. "Solution NMR structure of an immunodominant epitope of myelin basic protein." Febs J. 2006; 273(3): 601-14. PMID: 16420483 | ||||
| Farkas A, Tompa P, Schad E, Sinka R, Jekely G, Friedrich P. "Autolytic activation and localization in Schneider cells (S2) of calpain B from Drosophila." Biochem J. 2004; 378(Pt 2): 299-305. PMID: 14614768 | ||||
| Farooq A, Zeng L, Yan KS, Ravichandran KS, Zhou MM. "Coupling of folding and binding in the PTB domain of the signaling protein Shc." Structure. 2003; 11(8): 905-13. PMID: 12906822 | ||||
| Farreyrol K, Pearson MN, Grisoni M, Cohen D, Beck D. "Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla." Arch Virol. 2006; 151(5): 905-19. PMID: 16421638 | ||||
| Fasshauer D, Antonin W, Margittai M, Pabst S, Jahn R. "Mixed and non-cognate SNARE complexes. Characterization of assembly and biophysical properties." J Biol Chem. 1999; 274(22): 15440-15446. PMID: 10336434 | ||||
| Fasshauer D, Eliason WK, Brünger AT, Jahn R. "Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly." Biochemistry. 1998; 37(29): 10354-62. PMID: 9671503 | ||||
| Fasshauer D, Otto H, Eliason WK, Jahn R, Brunger AT. "Structural changes are associated with soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor complex formation." J Biol Chem. 1997; 272(44): 28036-41. PMID: 9346956 brunger@stanford.edu | ||||
| Favrin G, Irback A, Wallin S. "Sequence-based study of two related proteins with different folding behaviors." Proteins. 2004; 54(1): 8-12. PMID: 14705019 | ||||
| Fazi B, Cope MJ, Douangamath A, Ferracuti S, Schirwitz K, Zucconi A, Drubin DG, Wilmanns M, Cesareni G, Castagnoli L. "Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis." J. Biol. Chem.. 2001; 277(7): 5290-8. PMID: 11668184 | ||||
| Feige MJ, Groscurth S, Marcinowski M, Shimizu Y, Kessler H, Hendershot LM, Buchner J. "An unfolded CH1 domain controls the assembly and secretion of IgG antibodies." Mol. Cell. 2009; 34(5): 569-79. PMID: 19524537 | ||||
| Feige MJ, Hendershot LM, Buchner J. "How antibodies fold." Trends Biochem Sci. 2009. PMID: 20022755 | ||||
| Feldkamp U, Schroeder H, Niemeyer CM. "Design and evaluation of single-stranded DNA carrier molecules for DNA-directed assembly." J Biomol Struct Dyn. 2006; 23(6): 657-66. PMID: 16615811 | ||||
| Felix NJ, Suri A, Walters JJ, Horvath S, Gross ML, Allen PM. "I-Ep-bound self-peptides: identification, characterization, and role in alloreactivity." J Immunol. 2006; 176(2): 1062-71. PMID: 16393994 | ||||
| Felizmenio-Quimio ME, Daly NL, Craik DJ. "Circular proteins in plants: solution structure of a novel macrocyclic trypsin inhibitor from Momordica cochinchinensis." J Biol Chem. 2001; 276(25): 22875-82. PMID: 11292835 | ||||
| Feller SM, Lewitzky M. "What is in a loop?" Cell Commun. Signal. 2012; 10(1): 31. PMID: 23110718 | ||||
| Felmlee T, Pellett S, Welch RA. "Nucleotide sequence of an Escherichia coli chromosomal hemolysin." J Bacteriol. 1985; 163(1): 94-105. PMID: 3891743 | ||||
| Feng L, Lee KA. "A repetitive element containing a critical tyrosine residue is required for transcriptional activation by the EWS/ATF1 oncogene." Oncogene. 2001; 20(31): 4161-8. PMID: 11464282 | ||||
| Ferentz AE, Walker GC, Wagner G. "Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD'2C)." EMBO J.. 2001; 20(15): 4287-98. PMID: 11483531 | ||||
| Fermani S, Trivelli X, Sparla F, Thumiger A, Calvaresi M, Marri L, Falini G, Zerbetto F, Trost P. "Conformational selection and folding-upon-binding of intrinsically disordered protein CP12 regulate photosynthetic enzymes assembly." J. Biol. Chem.. 2012; 287(25): 21372-83. PMID: 22514274 | ||||
| Fernandes F, Loura L, Koehorst RB, Dixon N, Kee TP, Hemminga MA, Prieto M. "Interaction of the indole class of vacuolar H(+)-ATPase inhibitors with lipid bilayers." Biochemistry. 2006; 45(16): 5271-9. PMID: 16618115 | ||||
| Fernández-Ballester G, Maya J, Martín A, Parche S, Gómez J, Titgemeyer F, Neira JL. "The histidine-phosphocarrier protein of Streptomyces coelicolor folds by a partially folded species at low pH." Eur. J. Biochem.. 2003; 270(10): 2254-67. PMID: 12752445 | ||||
| Fernandez I, Ubach J, Dulubova I, Zhang X, Sudhof TC, Rizo J. "Three-dimensional structure of an evolutionarily conserved N-terminal domain of syntaxin 1A." Cell. 1998; 94(6): 841-849. PMID: 9753330 | ||||
| Ferraz RM, Aris A, Villaverde A. "Enhanced molecular recognition signal in allosteric biosensing by proper substrate selection." Biotechnol Bioeng. 2006; 94(1): 193-9. PMID: 16538674 | ||||
| Ferre-D'Amare AR, Pognonec P, Roeder RG, Burley SK. "Structure and function of the b/HLH/Z domain of USF." Embo J. 1994; 13(1): 180-9. PMID: 8306960 | ||||
| Ferreiro DU, de Prat-Gay G. "A protein-DNA binding mechanism proceeds through multi-state or two-state parallel pathways." J Mol Biol. 2003; 331(1): 89-99. PMID: 12875838 | ||||
| Ferro-Flores G, Torres-Garcia E, Garcia-Pedroza L, Arteaga de Murphy C, Pedraza-Lopez M, Garnica-Garza H. "An efficient, reproducible and fast preparation of 188Re-anti-CD20 for the treatment of non-Hodgkin's lymphoma." Nucl Med Commun. 2005; 26(9): 793-9. PMID: 16096583 | ||||
| Ferron F, Rancurel C, Longhi S, Cambillau C, Henrissat B, Canard B. "VaZyMolO: a tool to define and classify modularity in viral proteins." J Gen Virol. 2005; 86(Pt 3): 743-9. PMID: 15722535 | ||||
| Fieber W, Kragelund BB, Meldal M, Poulsen FM. "Reversible dimerization of acid-denatured ACBP controlled by helix A4." Biochemistry. 2005; 44(5): 1375-84. PMID: 15683223 | ||||
| Fiebig KM, Rice LM, Pollock E, Brunger AT. "Folding intermediates of SNARE complex assembly." Nat Struct Biol. 1999; 6(2): 117-23. PMID: 10048921 brunger@stanford.edu | ||||
| Fiegen D, Haeusler LC, Blumenstein L, Herbrand U, Dvorsky R, Vetter IR, Ahmadian MR. "Alternative splicing of Rac1 generates Rac1b, a self-activating GTPase." J Biol Chem. 2004; 279(6): 4743-9. PMID: 14625275 | ||||
| Figueras i Ventura RM, Vandergheynst P, Frossard P. "Low-rate and flexible image coding with redundant representations." IEEE Trans Image Process. 2006; 15(3): 726-39. PMID: 16519358 | ||||
| Fillingham I, Gingras AR, Papagrigoriou E, Patel B, Emsley J, Critchley DR, Roberts GC, Barsukov IL. "A Vinculin Binding Domain from the Talin Rod Unfolds to Form a Complex with the Vinculin Head." Structure. 2005; 13(1): 65-74. PMID: 15642262 | ||||
| Findlater EE, Graether SP. "NMR assignments of the intrinsically disordered K2 and YSK2 dehydrins." Biomol NMR Assign. 2009; 3(2): 273-5. PMID: 19842064 | ||||
| Fink AL. "Natively unfolded proteins." Curr Opin Struct Biol. 2005; 15(1): 35-41. PMID: 15718131 | ||||
| Fink AL, Calciano LJ, Goto Y, Kurotsu T, Palleros DR. "Classification of acid denaturation of proteins: intermediates and unfolded states." Biochemistry. 1994; 33(41): 12504-12511. PMID: 7918473 | ||||
| Finney NS. "Combinatorial discovery of fluorophores and fluorescent probes." Curr Opin Chem Biol. 2006; 10(3): 238-45. PMID: 16679045 | ||||
| Fiorin G, Biekofsky RR, Pastore A, Carloni P. "Unwinding the helical linker of calcium-loaded calmodulin: a molecular dynamics study." Proteins. 2005; 61(4): 829-39. PMID: 16193483 | ||||
| Firczuk M, Mucha A, Bochtler M. "Crystal Structures of Active LytM." J Mol Biol. 2005. PMID: 16269153 | ||||
| Fischer D, Geyer A. "NMR spectroscopic characterization of the membrane affinity of polyols." Magn Reson Chem. 2005; 43(11): 893-901. PMID: 16142831 | ||||
| Fischer RS, Fowler VM. "Tropomodulins: life at the slow end." Trends Cell Biol. 2003; 13(11): 593-601. PMID: 14573353 | ||||
| Fisher LW, Torchia DA, Fohr B, Young MF, Fedarko NS. "Flexible structures of SIBLING proteins, bone sialoprotein, and osteopontin." Biochem Biophys Res Commun. 2001; 280(2): 460-5. PMID: 11162539 lfisher@dir.nidcr.nih.gov | ||||
| Fitzgerald PA, Davey TW, Warr GG. "Micellar structure in gemini nonionic surfactants from small-angle neutron scattering." Langmuir. 2005; 21(16): 7121-8. PMID: 16042432 | ||||
| Fitzkee NC, Rose GD. "Sterics and solvation winnow accessible conformational space for unfolded proteins." J Mol Biol. 2005; 353(4): 873-87. PMID: 16185713 | ||||
| Fladvad M, Zhou K, Moshref A, Pursglove S, Safsten P, Sunnerhagen M. "N and C-terminal sub-regions in the c-Myc transactivation region and their joint role in creating versatility in folding and binding." J Mol Biol. 2005; 346(1): 175-89. PMID: 15663936 | ||||
| Flaugh SL, Lumb KJ. "Effects of macromolecular crowding on the intrinsically disordered proteins c-Fos and p27(Kip1)." Biomacromolecules. 2001; 2(2): 538-540. PMID: 11749217 | ||||
| Fletcher CM, McGuire AM, Gingras AC, Li H, Matsuo H, Sonenberg N, Wagner G. "4E binding proteins inhibit the translation factor eIF4E without folded structure." Biochemistry. 1998; 37(1): 9-15. PMID: 9453748 | ||||
| Fletcher CM, Wagner G. "The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein." Protein Sci. 1998; 7(7): 1639-42. PMID: 9684899 | ||||
| Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B. "FlyRNAi: the Drosophila RNAi screening center database." Nucleic Acids Res. 2006; 34(Database issue): D489-94. PMID: 16381918 | ||||
| Flower TR, Chesnokova LS, Froelich CA, Dixon C, Witt SN. "Heat shock prevents alpha-synuclein-induced apoptosis in a yeast model of Parkinson's disease." J Mol Biol. 2005; 351(5): 1081-100. PMID: 16051265 | ||||
| Focia PJ, Craig SP 3rd, Eakin AE. "Approaching the transition state in the crystal structure of a phosphoribosyltransferase." Biochemistry. 1998; 37(49): 17120-17127. PMID: 9860824 | ||||
| Focia PJ, Craig SP 3rd, Nieves-Alicea R, Fletterick RJ, Eakin AE. "A 1.4 A crystal structure for the hypoxanthine phosphoribosyltransferase of Trypanosoma cruzi." Biochemistry. 1998; 37(43): 15066-15075. PMID: 9790669 | ||||
| Foettinger A, Leitner A, Lindner W. "Solid-phase capture and release of arginine peptides by selective tagging and boronate affinity chromatography." J Chromatogr A. 2005; 1079(1-2): 187-96. PMID: 16038304 | ||||
| Folkers PJ, Clore GM, Driscoll PC, Dodt J, Kohler S, Gronenborn AM. "Solution structure of recombinant hirudin and the Lys-47----Glu mutant: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study." Biochemistry. 1989; 28(6): 2601-17. PMID: 2567183 | ||||
| Folk P, Puta F, Skruzny M. "Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathways." Cell Mol Life Sci. 2004; 61(6): 629-40. PMID: 15052407 | ||||
| Fontana A, de Laureto PP, Spolaore B, Frare E, Picotti P, Zambonin M. "Probing protein structure by limited proteolysis." Acta Biochim Pol. 2004; 51(2): 299-321. PMID: 15218531 | ||||
| Fontes MR, Teh T, Jans D, Brinkworth RI, Kobe B. "Structural basis for the specificity of bipartite nuclear localization sequence binding by importin-alpha." J. Biol. Chem.. 2003; 278(30): 27981-7. PMID: 12695505 | ||||
| Forbes JG, Flaherty DB, Ma K, Qadota H, Benian GM, Wang K. "Extensive and modular intrinsically disordered segments in C. elegans TTN-1 and implications in filament binding, elasticity and oblique striation." J Mol Biol. . PMID: 20346955 | ||||
| Forsee WT, Cartee RT, Yother J. "Role of the carbohydrate binding site of the Streptococcus pneumoniae capsular polysaccharide type 3 synthase in the transition from oligosaccharide to polysaccharide synthesis." J Biol Chem. 2006. PMID: 16410247 | ||||
| Fossen T, Wray V, Bruns K, Rachmat J, Henklein P, Tessmer U, Maczurek A, Klinger P, Schubert U. "Solution structure of the human immunodeficiency virus type 1 p6 protein." J Biol Chem. 2005. PMID: 16234236 | ||||
| Foucault M, Mayol K, Receveur-Brechot V, Bussat MC, Klinguer-Hamour C, Verrier B, Beck A, Haser R, Gouet P, Guillon C. "UV and X-ray structural studies of a 101-residue long Tat protein from a HIV-1 primary isolate and of its mutated, detoxified, vaccine candidate." Proteins. 2009. PMID: 20034112 | ||||
| Foulkes JG, Cohen P. "The regulation of glycogen metabolism. Purification and properties of protein phosphatase inhibitor-2 from rabbit skeletal muscle." Eur J Biochem. 1980; 105(1): 195-203. PMID: 6245879 | ||||
| Fox KR, Brown T. "An extra dimension in nucleic acid sequence recognition." Q Rev Biophys. 2006: 1-10. PMID: 16737560 | ||||
| Francis Shaw B, Durazo A, Nersissian AM, Whitelegge JP, Faull KF, Selverstone Valentine J. "Local unfolding in a destabilized, pathogenic variant of superoxide dismutase 1 observed with H/D exchange and mass spectrometry." J Biol Chem. 2006. PMID: 16644738 | ||||
| Freddi G, Anghileri A, Sampaio S, Buchert J, Monti P, Taddei P. "Tyrosinase-catalyzed modification of Bombyx mori silk fibroin: Grafting of chitosan under heterogeneous reaction conditions." J Biotechnol. 2006. PMID: 16621091 | ||||
| Frenal K, Callebaut I, Wecker K, Prochnicka-Chalufour A, Dendouga N, Zinn-Justin S, Delepierre M, Tomavo S, Wolff N. "Structural and Functional Characterization of the TgDRE Multidomain Protein, a DNA Repair Enzyme from Toxoplasma gondii." Biochemistry. 2006; 45(15): 4867-4874. PMID: 16605254 | ||||
| Friedrich P. "The intriguing Ca2+ requirement of calpain activation." Biochem Biophys Res Commun. 2004; 323(4): 1131-3. PMID: 15451413 | ||||
| Friedrich P, Bozoky Z. "Digestive versus regulatory proteases: on calpain action in vivo." Biol Chem. 2005; 386(7): 609-12. PMID: 16207081 | ||||
| Friedrich P, Tompa P, Farkas A. "The calpain-system of Drosophila melanogaster: coming of age." Bioessays. 2004; 26(10): 1088-96. PMID: 15382138 | ||||
| Frimpong AK, Abzalimov RR, Uversky VN, Kaltashov IA. "Characterization of intrinsically disordered proteins with electrospray ionization mass spectrometry: Conformational heterogeneity of alpha-synuclein." Proteins. 2009. PMID: 19847913 | ||||
| Fritsche E, Humm A, Huber R. "Substrate binding and catalysis by L-arginine:glycine amidinotransferase--a mutagenesis and crystallographic study." Eur J Biochem. 1997; 247(2): 483-90. PMID: 9266688 | ||||
| Frohlich RF, Andersen FF, Westergaard O, Andersen AH, Knudsen BR. "Regions within the N-terminal domain of human topoisomerase I exert important functions during strand rotation and DNA binding." J Mol Biol. 2004; 336(1): 93-103. PMID: 14741206 | ||||
| Frontera A, Saczewski F, Gdaniec M, Dziemidowicz-Borys E, Kurland A, Deya PM, Quinonero D, Garau C. "Anion-pi interactions in cyanuric acids: a combined crystallographic and computational study." Chemistry. 2005; 11(22): 6560-7. PMID: 16100737 | ||||
| Fuchs PF, Bonvin AM, Bochicchio B, Pepe A, Alix AJ, Tamburro AM. "Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide." Biophys J. 2006; 90(8): 2745-59. PMID: 16443656 | ||||
| Fu C, Li J, Ma S. "Efficient two-step synthesis of 3-halo-3-enals or 2-halo-2-alkenyl ketones from propargylic bromides via a unique cationic 1,2-aryl or proton shift in electrophilic addition reaction of 2,3-allenols with X+." Chem Commun (Camb). 2005: 4119-21. PMID: 16091819 | ||||
| Fu, G., S.R. Qiu, C.A. Orme, D.E. Morse, and J.J. DeYoreo. "Acceleration of Calcite Kinetics by Abalone Nacre Proteins (+cover)." Advanced Materials. 2005; 17(22): 2678-2683. | ||||
| Fu G, Valiyaveettil S, Wopenka B, Morse DE. "CaCO3 biomineralization: acidic 8-kDa proteins isolated from aragonitic abalone shell nacre can specifically modify calcite crystal morphology." Biomacromolecules. 2006; 6(3): 1289-98. PMID: 15877344 | ||||
| Fuh G, Mulkerrin MG, Bass S, McFarland N, Brochier M, Bourell JH, Light DR, Wells JA. "The human growth hormone receptor. Secretion from Escherichia coli and disulfide bonding pattern of the extracellular binding domain." J Biol Chem. 1990; 265(6): 3111-3115. PMID: 2406245 | ||||
| Fujinaga M, Berthet-Colominas C, Yaremchuk AD, Tukalo MA, Cusack S. "Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 A resolution." J Mol Biol. 1993; 234(1): 222-33. PMID: 8230201 | ||||
| Furrie E, Macfarlane S, Thomson G, Macfarlane GT. "Toll-like receptors-2, -3 and -4 expression patterns on human colon and their regulation by mucosal-associated bacteria." Immunology. 2005; 115(4): 565-74. PMID: 16011525 | ||||
| Fürst J, Schedlbauer A, Gandini R, Garavaglia ML, Saino S, Gschwentner M, Sarg B, Lindner H, Jakab M, Ritter M, Bazzini C, Botta G, Meyer G, Kontaxis G, Tilly BC, Konrat R, Paulmichl M. "ICln159 folds into a pleckstrin homology domain-like structure. Interaction with kinases and the splicing factor LSm4." J. Biol. Chem.. 2005; 280(35): 31276-82. PMID: 15905169 | ||||
| Fuxreiter M, Simon I, Bondos S. "Dynamic protein-DNA recognition: beyond what can be seen." Trends Biochem. Sci.. 2011; 36(8): 415-23. PMID: 21620710 | ||||
| Fuxreiter M, Simon I, Friedrich P, Tompa P. "Preformed structural elements feature in partner recognition by intrinsically unstructured proteins." J Mol Biol. 2004; 338(5): 1015-26. PMID: 15111064 | ||||
| Fu Y, Buryanovskyy L, Zhang Z. "Crystal structure of quinone reductase 2 in complex with cancer prodrug CB1954." Biochem. Biophys. Res. Commun.. 2005; 336(1): 332-8. PMID: 16129418 | ||||
| Fu Z, Runquist JA, Mongomery C, Miziorko HM, Kim JJ. "Human Hydroxymethylglutaryl-CoA lyase: Functional insights from structures of Acyl-CoA-containing ternary complexes." 2010. PMID: 20558737 | ||||
| Fyffe SA, Alphey MS, Buetow L, Smith TK, Ferguson MA, Sorensen MD, Bjorkling F, Hunter WN. "Recombinant Human PPAR-beta/delta Ligand-binding Domain is Locked in an Activated Conformation by Endogenous Fatty Acids." J Mol Biol. 2006; 356(4): 1005-13. PMID: 16405912 | ||||
| Top of Page | ||||
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|