This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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Maag D, Algire MA, Lorsch JR. "Communication between Eukaryotic Translation Initiation Factors 5 and 1A within the Ribosomal Pre-initiation Complex Plays a Role in Start Site Selection." J Mol Biol. 2006; 356(3): 724-37. PMID: 16380131
Ma B, Shatsky M, Wolfson HJ, Nussinov R. "Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations." Protein Sci. 2002; 11(2): 184-97. PMID: 11790828
Ma B, Wolfson HJ, Nussinov R. "Protein functional epitopes: hot spots, dynamics and combinatorial libraries." Curr Opin Struct Biol. 2001; 11(3): 364-9. PMID: 11406388
MacBeath G, Kast P, Hilvert D. "Redesigning enzyme topology by directed evolution." Science. 1998; 279(5358): 1958-61. PMID: 9506949
MacDonald JA, Ishida H, Butler EI, Ulke-Lemée A, Chappellaz M, Tulk SE, Chik JK, Vogel HJ. "Intrinsically disordered N-terminus of calponin homology-associated smooth muscle protein (CHASM) interacts with the calponin homology domain to enable tropomyosin binding." Biochemistry. 2012; 51(13): 2694-705. PMID: 22424482
Macedowska A, Siodlak D, Rzeszotarska B. "Conformational properties of N-acetyl-N-methyl-alpha,beta-dehydroalanine N'-methylamide." Acta Biochim Pol. 2006; 53(1): 227-32. PMID: 16528414
Maeda N, Kim HS, Azen EA, Smithies O. "Differential RNA splicing and post-translational cleavages in the human salivary proline-rich protein gene system." J Biol Chem. 1985; 260(20): 11123-30. PMID: 2993301
Magesh S, Suzuki T, Miyagi T, Ishida H, Kiso M. "Homology modeling of human sialidase enzymes NEU1, NEU3 and NEU4 based on the crystal structure of NEU2: Hints for the design of selective NEU3 inhibitors." J Mol Graph Model. 2006. PMID: 16427342
Magidovich E, Orr I, Fass D, Abdu U, Yifrach O. "Intrinsic disorder in the C-terminal domain of the Shaker voltage-activated K+ channel modulates its interaction with scaffold proteins." Proc Natl Acad Sci U S A. 2007; 104(32): 13022-7. PMID: 17666528
Maguire BA, Manuilov AV, Zimmermann RA. "Differential effects of replacing Escherichia coli ribosomal protein L27 with its homologue from Aquifex aeolicus." J Bacteriol. 2001; 183(22): 6565-72. PMID: 11673426
Maguire ML, Guler-Gane G, Nietlispach D, Raine AR, Zorn AM, Standart N, Broadhurst RW. "Solution structure and backbone dynamics of the KH-QUA2 region of the Xenopus STAR/GSG quaking protein." J Mol Biol. 2005; 348(2): 265-79. PMID: 15811367
Mahley RW, Weisgraber KH, Huang Y. "Apolipoprotein E4: a causative factor and therapeutic target in neuropathology, including Alzheimer's disease." Proc Natl Acad Sci U S A. 2006; 103(15): 5644-51. PMID: 16567625
Maignan S, Guilloteau JP, Zhou-Liu Q, Clément-Mella C, Mikol V. "Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active site with other viral integrases." J. Mol. Biol.. 1998; 282(2): 359-68. PMID: 9735293
Maiti A, Morgan MT, Pozharski E, Drohat AC. "Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition." Proc. Natl. Acad. Sci. U.S.A.. 2008; 105(26): 8890-5. PMID: 18587051
Maiti NC, Apetri MM, Zagorski MG, Carey PR, Anderson VE. "Raman spectroscopic characterization of secondary structure in natively unfolded proteins: alpha-synuclein." J Am Chem Soc. 2004; 126(8): 2399-408. PMID: 14982446
Maity TS, Weeks KM. "A threefold RNA-protein interface in the signal recognition particle gates native complex assembly." J Mol Biol. 2007; 369(2): 512-24. PMID: 17434535
Majava V, Wang C, Myllykoski M, Kangas SM, Kang SU, Hayashi N, Baumgartel P, Heape AM, Lubec G, Kursula P. "Structural analysis of the complex between calmodulin and full-length myelin basic protein, an intrinsically disordered molecule." Amino Acids. 2009. PMID: 19855925
Major B, Kardos J, Kékesi KA, Lorincz Z, Závodszky P, Gál P. "Calcium-dependent conformational flexibility of a CUB domain controls activation of the complement serine protease C1r." J Biol Chem. 2010; 285(16): 11863-11869. PMID: 20178990
Ma K, Kan L, Wang K. "Polyproline II helix is a key structural motif of the elastic PEVK segment of titin." Biochemistry. 2001; 40(12): 3427-38. PMID: 11297408
Makokha M, Hare M, Li M, Hays T, Barbar E. "Interactions of cytoplasmic dynein light chains Tctex-1 and LC8 with the intermediate chain IC74." Biochemistry. 2002; 41(13): 4302-11. PMID: 11914076
Makowski L. "Characterization of proteins with wide-angle X-ray solution scattering (WAXS)." J Struct Funct Genomics. . PMID: 20049539
Malek S, Huang DB, Huxford T, Ghosh S, Ghosh G. "X-ray crystal structure of an IkappaBbeta x NF-kappaB p65 homodimer complex." J Biol Chem. 2003; 278(25): 23094-100. PMID: 12686541
Malicet C, Dagorn JC, Neira JL, Iovanna JL. "p8 and Prothymosin Alpha: Unity is Strength." Cell Cycle. 2006; 5(8): 829-30. PMID: 16628001
Malicet C, Giroux V, Vasseur S, Dagorn JC, Neira JL, Iovanna JL. "Regulation of apoptosis by the p8/prothymosin alpha complex." Proc. Natl. Acad. Sci. U.S.A.. 2006; 103(8): 2671-6. PMID: 10493524
Malmendal A, Halpain S, Chazin WJ. "Nascent structure in the kinase anchoring domain of microtubule-associated protein 2." Biochem Biophys Res Commun. 2003; 301(1): 136-42. PMID: 12535652
Mamedova L, Capra V, Accomazzo MR, Gao ZG, Ferrario S, Fumagalli M, Abbracchio MP, Rovati GE, Jacobson KA. "CysLT1 leukotriene receptor antagonists inhibit the effects of nucleotides acting at P2Y receptors." Biochem Pharmacol. 2005; 71(1-2): 115-25. PMID: 16280122
Manalan AS, Klee CB. "Activation of calcineurin by limited proteolysis." Proc. Natl. Acad. Sci. U.S.A.. 1983; 80(14): 4291-5. PMID: 6576338
Mandell AJ, Selz KA, Owens MJ, Kinkead B, Shlesinger MF, Gutman DA, Arguragi V. "Cellular and behavioral effects of D2 dopamine receptor hydrophobic eigenmode-targeted peptide ligands." Neuropsychopharmacology. 2003; 28 Suppl 1: S98-107. PMID: 12827150
Manelytea, Laura, Colin P. Guyb, Rachel M. Smitha, Mark S. Dillinghama, Peter McGlynnb and Nigel J. Savery. "The unstructured C-terminal extension of UvrD interacts with UvrB, but is dispensable for nucleotide excision repair." DNA Repair (Amst). 2009; 8: 1300-1310. PMID: 19762288
Mangelsdorf DJ, Ong ES, Dyck JA, Evans RM. "Nuclear receptor that identifies a novel retinoic acid response pathway." Nature. 1990; 345(6272): 224-9. PMID: 2159111
Manion MK, O'Neill JW, Giedt CD, Kim KM, Zhang KY, Hockenbery DM. "Bcl-XL mutations suppress cellular sensitivity to antimycin A." J Biol Chem. 2004; 279(3): 2159-65. PMID: 14534311
Mani R, Waring AJ, Lehrer RI, Hong M. "Membrane-disruptive abilities of beta-hairpin antimicrobial peptides correlate with conformation and activity: a 31P and 1H NMR study." Biochim Biophys Acta. 2005; 1716(1): 11-8. PMID: 16182236
Mann D, Reinemann C, Stoltenburg R, Strehlitz B. "In vitro selection of DNA aptamers binding ethanolamine." Biochem Biophys Res Commun. 2005; 338(4): 1928-34. PMID: 16289104
Mansson PE, Sugino A, Harris SE. "Use of a cloned double stranded cDNA coding for a major androgen dependent protein in rat seminal vesicle secretion: the effect of testosterone in gene expression." Nucleic Acids Res. 1981; 9: 935-946. PMID: 6164983
Maraia RJ, Bayfield MA. "The La protein-RNA complex surfaces." Mol Cell. 2006; 21(2): 149-52. PMID: 16427005
Maraver A, Ona A, Abaitua F, Gonzalez D, Clemente R, Ruiz-Diaz JA, Caston JR, Pazos F, Rodriguez JF. "The oligomerization domain of VP3, the scaffolding protein of infectious bursal disease virus, plays a critical role in capsid assembly." J Virol. 2003; 77(11): 6438-49. PMID: 12743301
Marco C, Eleonora G, Luca S, Edward PS, Antonella I, Roberta B. "PoInTree: a polar and interactive phylogenetic tree." Genomics Proteomics Bioinformatics. 2005; 3(1): 58-60. PMID: 16144524
Marcoux J, Man P, Castellan M, Vivès C, Forest E, Fieschi F. "Conformational changes in p47(phox) upon activation highlighted by mass spectrometry coupled to hydrogen/deuterium exchange and limited proteolysis." Febs J. 2009; 583(4): 835-840. PMID: 19192478.
Mardy S, Miura Y, Endo F, Matsuda I, Indo Y. "Congenital insensitivity to pain with anhidrosis (CIPA): effect of TRKA (NTRK1) missense mutations on autophosphorylation of the receptor tyrosine kinase for nerve growth factor." Hum Mol Genet. 2001; 10(3): 179-188. PMID: 11159935
Margiolaki I, Wright JP, Fitch AN, Fox GC, Von Dreele RB. "Synchrotron X-ray powder diffraction study of hexagonal turkey egg-white lysozyme." Acta Crystallogr D Biol Crystallogr. 2005; 61(Pt 4): 423-32. PMID: 15805597
Margittai M, Fasshauer D, Jahn R, Langen R. "The Habc domain and the SNARE core complex are connected by a highly flexible linker." Biochemistry. 2003; 42(14): 4009-4014. PMID: 12680753
Margolis HC, Beniash E, Fowler CE. "Role of macromolecular assembly of enamel matrix proteins in enamel formation." J. Dent. Res.. 2006; 85(9): 775-93. PMID: 16931858
Markus MA, Hinck AP, Huang S, Draper DE, Torchia DA. "High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA." Nat Struct Biol. 1997; 4(1): 70-7. PMID: 8989327
Mark WY, Liao JC, Lu Y, Ayed A, Laister R, Szymczyna B, Chakrabartty A, Arrowsmith CH. "Characterization of segments from the central region of BRCA1: an intrinsically disordered scaffold for multiple protein-protein and protein-DNA interactions?" J Mol Biol. 2005; 345(2): 275-87. PMID: 15571721
Marquardt A, Muyldermans S, Przybylski M. "A synthetic camel anti-lysozyme peptide antibody (peptibody) with flexible loop structure identified by high-resolution affinity mass spectrometry." Chemistry. 2006; 12(7): 1915-23. PMID: 16358348
Marri L, Pesaresi A, Valerio C, Lamba D, Pupillo P, Trost P, Sparla F. "In vitro characterization of Arabidopsis CP12 isoforms reveals common biochemical and molecular properties." J. Plant Physiol.. 2010; 167(12): 939-50. PMID: 20399532
Marri L, Sparla F, Pupillo P, Trost P. "Co-ordinated gene expression of photosynthetic glyceraldehyde-3-phosphate dehydrogenase, phosphoribulokinase, and CP12 in Arabidopsis thaliana." J. Exp. Bot.. 2004; 56(409): 73-80. PMID: 15533878
Marri L, Trost P, Pupillo P, Sparla F. "Reconstitution and properties of the recombinant glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase supramolecular complex of Arabidopsis." Plant Physiol.. 2005; 139(3): 1433-43. PMID: 16258009
Marri L, Trost P, Trivelli X, Gonnelli L, Pupillo P, Sparla F. "Spontaneous assembly of photosynthetic supramolecular complexes as mediated by the intrinsically unstructured protein CP12." J Biol Chem. 2007. PMID: 17947231
Martemyanov KA, Gudkov AT. "Domain III of elongation factor G from Thermus thermophilus is essential for induction of GTP hydrolysis on the ribosome." J Biol Chem. 2000; 275(46): 35820-4. PMID: 10940297
Martens JH, Kzhyshkowska J, Falkowski-Hansen M, Schledzewski K, Gratchev A, Mansmann U, Schmuttermaier C, Dippel E, Koenen W, Riedel F, Sankala M, Tryggvason K, Kobzik L, Moldenhauer G, Arnold B, Goerdt S. "Differential expression of a gene signature for scavenger/lectin receptors by endothelial cells and macrophages in human lymph node sinuses, the primary sites of regional metastasis." J Pathol. 2006. PMID: 16440291
Marti AA, Jockusch S, Li Z, Ju J, Turro NJ. "Molecular beacons with intrinsically fluorescent nucleotides." Nucleic Acids Res. 2006; 34(6): e50. PMID: 16595796
Martínez-Cruz LA, Encinar JA, Kortazar D, Prieto J, Gómez J, Fernández-Millán P, Lucas M, Arribas EA, Fernández JA, Martínez-Chantar ML, Mato JM, Neira JL. "The CBS domain protein MJ0729 of Methanocaldococcus jannaschii is a thermostable protein with a pH-dependent self-oligomerization." Biochemistry. 2009; 48(12): 2760-76. PMID: 19267448
Martínez-Rodríguez S, Andújar-Sánchez M, Neira JL, Clemente-Jiménez JM, Jara-Pérez V, Rodríguez-Vico F, Las Heras-Vázquez FJ. "Site-directed mutagenesis indicates an important role of cysteines 76 and 181 in the catalysis of hydantoin racemase from Sinorhizobium meliloti." Protein Sci.. 2006; 15(12): 2729-38. PMID: 14640663
Martínez-Rodríguez S, Encinar JA, Hurtado-Gómez E, Prieto J, Clemente-Jiménez JM, Las Heras-Vázquez FJ, Rodríguez-Vico F, Neira JL. "Metal-triggered changes in the stability and secondary structure of a tetrameric dihydropyrimidinase: a biophysical characterization." Biophys. Chem.. 2008; 139(1): 42-52. PMID: 19008030
Martin-Martinez M, Marty A, Jourdan M, Escrieut C, Archer E, Gonzalez-Muniz R, Garcia-Lopez MT, Maigret B, Herranz R, Fourmy D. "Combination of molecular modeling, site-directed mutagenesis, and SAR studies to delineate the binding site of pyridopyrimidine antagonists on the human CCK1 receptor." J Med Chem. 2005; 48(15): 4842-50. PMID: 16033264
Martins SM, Chapeaurouge A, Ferreira ST. "Equilibrium unfolding and conformational plasticity of troponin I and T." Eur J Biochem. 2002; 269(22): 5484-91. PMID: 12423346
Martin V, Rodriguez-Gabriel MA, McDonald WH, Watt S, Yates JR 3rd, Bahler J, Russell P. "Cip1 and Cip2 Are Novel RNA-Recognition-Motif Proteins That Counteract Csx1 Function during Oxidative Stress." Mol Biol Cell. 2006. PMID: 16407405
Martsev SP, Dubnovitsky AP, Stremovsky OA, Chumanevich AA, Tsybovsky YI, Kravchuk ZI, Deyev SM. "Partially structured state of the functional VH domain of the mouse anti-ferritin antibody F11." FEBS Lett. 2002; 518(1-3): 177-82. PMID: 11997042
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Matczak-Jon E, Kurzak B, Kafarski P, Wozna A. "Coordination abilities of piperyd-1-yl-methane-1,1-diphosphonic acids towards zinc(II), magnesium(II) and calcium(II): Potentiometric and NMR studies." J Inorg Biochem. 2006. PMID: 16497378
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Matoba Y, Kumagai T, Yamamoto A, Yoshitsu H, Sugiyama M. "Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis." J Biol Chem. 2006; 281(13): 8981-90. PMID: 16436386
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Matsubara M, Yamauchi E, Hayashi N, Taniguchi H. "MARCKS, a major protein kinase C substrate, assumes non-helical conformations both in solution and in complex with Ca2+-calmodulin." FEBS Lett. 1998; 421(3): 203-7. PMID: 9468306
Matsuo H, Shirakawa M, Kyogoku Y. "Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR." J. Mol. Biol.. 1995; 254(4): 668-80. PMID: 7500341
Matsuura K, Hayashi K, Kobayashi K. "On-off switching of gene expression regulated with carbohydrate-lectin interaction." Biomacromolecules. 2005; 6(5): 2533-40. PMID: 16153090
Matsuzawa S, Li C, Ni CZ, Takayama S, Reed JC, Ely KR. "Structural analysis of Siah1 and its interactions with Siah-interacting protein (SIP)." J Biol Chem. 2003; 278(3): 1837-40. PMID: 12421809
Mauerer A, Lee G. "Changes in the amide I FT-IR bands of poly-L-lysine on spray-drying from alpha-helix, beta-sheet or random coil conformations." Eur J Pharm Biopharm. 2006; 62(2): 131-42. PMID: 16221545
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May FE, Church ST, Major S, Westley BR. "The closely related estrogen-regulated trefoil proteins TFF1 and TFF3 have markedly different hydrodynamic properties, overall charge, and distribution of surface charge." Biochemistry. 2003; 42(27): 8250-9. PMID: 12846574
Maza J, Das Sarma J, Koval M. "Defining a minimal motif required to prevent connexin oligomerization in the endoplasmic reticulum." J Biol Chem. 2005; 280(22): 21115-21. PMID: 15817491
Mazauric MH, Keith G, Logan D, Kreutzer R, Giege R, Kern D. "Glycyl-tRNA synthetase from Thermus thermophilus--wide structural divergence with other prokaryotic glycyl-tRNA synthetases and functional inter-relation with prokaryotic and eukaryotic glycylation systems." Eur J Biochem. 1998; 251(3): 744-57. PMID: 9490048
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Mazza C, Ohno M, Segref A, Mattaj IW, Cusack S. "Crystal structure of the human nuclear cap binding complex." Mol Cell. 2001; 8(2): 383-96. PMID: 11545740
McAllister C, Karymov MA, Kawano Y, Lushnikov AY, Mikheikin A, Uversky VN, Lyubchenko YL. "Protein interactions and misfolding analyzed by AFM force spectroscopy." J Mol Biol. 2005; 354(5): 1028-42. PMID: 16290901
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McBryant SJ, Krause C, Hansen JC. "Domain Organization and Quaternary Structure of the Saccharomyces cerevisiae Silent Information Regulator 3 Protein, Sir3p." Biochemistry. 2006; 45(51): 15941-8. PMID: 17176117
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Mehes G. "Chromosome Abnormalities with Prognostic Impact in B-cell Chronic Lymphocytic Leukemia." Pathol Oncol Res. 2005; 11(4): 205-10. PMID: 16388316
Mehta PA, Sivaprakash K, Parani M, Venkataraman G, Parida AK. "Generation and analysis of expressed sequence tags from the salt-tolerant mangrove species Avicennia marina (Forsk) Vierh." Theor Appl Genet. 2005; 110(3): 416-24. PMID: 15609053
Meinke G, Ezeokonkwo C, Balbo P, Stafford W, Moore C, Bohm A. "Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein." Biochemistry. 2008; 47(26): 6859-69. PMID: 18537269
Meinke G, Ezeokonkwo C, Balbo P, Stafford W, Moore C, Bohm A. "Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein." 2008; 47(26): 6859-6869. PMID: 18537269
Meisner WK, Sosnick TR. "Fast folding of a helical protein initiated by the collision of unstructured chains." Proc Natl Acad Sci U S A. 2004; 101(37): 13478-82. PMID: 15347811
Mei Y, Ran L, Ying X, Yuan Z, Xin S. "A sequential injection analysis/chemiluminescent plant tissue-based biosensor system for the determination of diamine." Biosens Bioelectron. 2006. PMID: 16621502
Mekmouche Y, Coppel Y, Hochgrafe K, Guilloreau L, Talmard C, Mazarguil H, Faller P. "Characterization of the ZnII binding to the peptide amyloid-beta1-16 linked to Alzheimer's disease." Chembiochem. 2005; 6(9): 1663-71. PMID: 16078307
Melamud E, Moult J. "Evaluation of disorder predictions in CASP5." Proteins. 2003; 53 Suppl 6: 561-5. PMID: 14579346
Mendoza C, Figueirido F, Tasayco ML. "DSC studies of a family of natively disordered fragments from Escherichia coli thioredoxin: surface burial in intrinsic coils." Biochemistry. 2003; 42(11): 3349-58. PMID: 12641467
Menetrey J, Cherfils J. "Structure of the small G protein Rap2 in a non-catalytic complex with GTP." Proteins. 1999; 37(3): 465-473. PMID: 10591105
Meng HY, Thomas KM, Lee AE, Zondlo NJ. "Effects of i and i+3 residue identity on cis-trans isomerism of the aromatic(i+1)-prolyl(i+2) amide bond: implications for type VI beta-turn formation." Biopolymers. 2006; 84(2): 192-204. PMID: 16208767
Merkel JS, Michaud GA, Salcius M, Schweitzer B, Predki PF. "Functional protein microarrays: just how functional are they?" Curr Opin Biotechnol. 2005; 16(4): 447-52. PMID: 16006113
Mester S, Schmidt B, Szabo G, Toth F, Nyarady J. "Biomechanics of the membranous flexor tendon sheath: the role of Grayson's ligaments." Plast Reconstr Surg. 2006; 117(2): 497-506. PMID: 16462332
Mesyanzhinov VV. "Bacteriophage T4: structure, assembly, and initiation infection studied in three dimensions." Adv Virus Res. 2004; 63: 287-352. PMID: 15530564
Metafora S, Esposito C, Caputo I, Lepretti M, Cassese D, Dicitore A, Ferranti P, Stiuso P. "Seminal vesicle protein IV and its derived active peptides: a possible physiological role in seminal clotting." Semin Thromb Hemost. 2007; 33(1): 53-9. PMID: 17253190
Michelitsch MD, Weissman JS. "A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions." Proc Natl Acad Sci U S A. 2000; 97(22): 11910-5. PMID: 11050225
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