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Bibliography | ||||
This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
If your papers on this topic are missing from our bibliography, this was not our intention. Please contact us and send pdfs of your missing papers. | ||||
Search bibliography | ||||
| Naeem A, Fatima S, Khan RH. "Characterization of partially folded intermediates of papain in presence of cationic, anion and non-ionic detergents at low pH." Biopolymers. 2006. PMID: 16598711 | ||||
| Nagourney RA. "Ex vivo programmed cell death and the prediction of response to chemotherapy." Curr Treat Options Oncol. 2006; 7(2): 103-10. PMID: 16455021 | ||||
| Naik MT, Suree N, Ilangovan U, Liew CK, Thieu W, Campbell DO, Clemens JJ, Jung ME, Clubb RT. "Staphylococcus aureus Sortase A transpeptidase. Calcium promotes sorting signal binding by altering the mobility and structure of an active site loop." J Biol Chem. 2006; 281(3): 1817-26. PMID: 16269411 | ||||
| Nakagawa A, Nakashima T, Taniguchi M, Hosaka H, Kimura M, Tanaka I. "The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome." Embo J. 1999; 18(6): 1459-1467. PMID: 10075918 | ||||
| Nakaji-Hirabayashi T, Endo H, Kawasaki H, Gemmei-Ide M, Kitano H. "Inclusion of bisphenols by a self-assembled monolayer of thiolated calix[6]arene on a gold surface." Environ Sci Technol. 2005; 39(14): 5414-20. PMID: 16082974 | ||||
| Nakamoto T. "A unified view of the initiation of protein synthesis." Biochem Biophys Res Commun. 2006; 341(3): 675-8. PMID: 16438936 | ||||
| Nakamura T, Hinagata J, Tanaka T, Imanishi T, Wada Y, Kodama T, Doi T. "HSP90, HSP70, and GAPDH directly interact with the cytoplasmic domain of macrophage scavenger receptors." Biochem Biophys Res Commun. 2002; 290(2): 858-64. PMID: 11785981 | ||||
| Nakanishi M, Robetorye RS, Adami GR, Pereira-Smith OM, Smith JR. "Identification of the active region of the DNA synthesis inhibitory gene p21Sdi1/CIP1/WAF1." Embo J. 1995; 14(3): 555-63. PMID: 7859744 | ||||
| Nakano M, Kasai K, Yoshida K, Tanimoto T, Tamaki Y, Tobita T. "Conformation of the fowl protamine, galline, and its binding properties to DNA." J Biochem (Tokyo). 1989; 105(1): 133-7. PMID: 2738040 | ||||
| Nakashima T, Kimura M, Nakagawa A, Tanaka I. "Crystallization and preliminary X-ray crystallographic study of a 23S rRNA binding domain of the ribosomal protein L2 from Bacillus stearothermophilus." J Struct Biol. 1998; 124(1): 99-101. PMID: 9931278 | ||||
| Nakayama J, Rice JC, Strahl BD, Allis CD, Grewal SI. "Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly." Science. 2001; 292(5514): 110-113. PMID: 11283354 | ||||
| Nakayama T, Fujiwara T, Miyazawa A, Asakawa S, Shimizu N, Shimizu Y, Mikoshiba K, Akagawa K. "Mapping of the human HPC-1/syntaxin 1A gene (STX1A) to chromosome 7 band q11.2." Genomics. 1997; 42(1): 173-176. PMID: 9177791 | ||||
| Nanasi PP, Jednakovits A. "Multilateral in vivo and in vitro protective effects of the novel heat shock protein coinducer, bimoclomol: results of preclinical studies." Cardiovasc Drug Rev. 2001; 19(2): 133-51. PMID: 11484067 | ||||
| Nanda V, DeGrado WF. "Computational design of heterochiral peptides against a helical target." J Am Chem Soc. 2006; 128(3): 809-16. PMID: 16417370 | ||||
| Nandi T, Dash D, Ghai R, BRao C, Kannan K, Brahmachari SK, Ramakrishnan C, Ramachandran S. "A novel complexity measure for comparative analysis of protein sequences from complete genomes." J Biomol Struct Dyn. 2003; 20(5): 657-68. PMID: 12643768 | ||||
| Nanduri V, Sorokulova IB, Samoylov AM, Simonian AL, Petrenko VA, Vodyanoy V. "Phage as a molecular recognition element in biosensors immobilized by physical adsorption." Biosens Bioelectron. 2006. PMID: 16730970 | ||||
| Nanga RP, Brender JR, Vivekanandan S, Popovych N, Ramamoorthy A. "NMR structure in a membrane environment reveals putative amyloidogenic regions of the SEVI precursor peptide PAP(248-286)." J Am Chem Soc. 2009; 131(49): 17972-9. PMID: 19995078 | ||||
| Napper CE, Drickamer K, Taylor ME. "Collagen binding by the mannose receptor mediated through the fibronectin type II domain." Biochem J. 2006. PMID: 16441238 | ||||
| Narayanaswamy R, Ellington AD. "Engineering RNA-based circuits." Handb Exp Pharmacol. 2006: 423-45. PMID: 16594629 | ||||
| Nardini M, Svergun D, Konarev PV, Spano S, Fasano M, Bracco C, Pesce A, Donadini A, Cericola C, Secundo F, Luini A, Corda D, Bolognesi M. "The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured." Protein Sci. 2006; 15(5): 1042-50. PMID: 16597837 | ||||
| Nash HA. "Topological nuts and bolts." Science. 1998; 279(5356): 1490-1491. PMID: 9508726 | ||||
| Nash P, Tang X, Orlicky S, Chen Q, Gertler FB, Mendenhall MD, Sicheri F, Pawson T, Tyers M. "Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication." Nature. 2001; 414(6863): 514-21. PMID: 11734834 | ||||
| Nassar N, Horn G, Herrmann C, Block C, Janknecht R, Wittinghofer A. "Ras/Rap effector specificity determined by charge reversal." Nat Struct Biol. 1996; 3(8): 723-729. PMID: 8756332 | ||||
| Nassar N, Horn G, Herrmann C, Scherer A, McCormick F, Wittinghofer A. "The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue." Nature. 1995; 375(6532): 554-560. PMID: 7791872 | ||||
| Natarajan K, Sawicki MW, Margulies DH, Mariuzza RA. "Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells." Biochemistry. 2000; 39(48): 14779-86. PMID: 11101293 | ||||
| Naud JF, McDuff FO, Sauve S, Montagne M, Webb BA, Smith SP, Chabot B, Lavigne P. "Structural and Thermodynamical Characterization of the Complete p21 Gene Product of Max." Biochemistry. 2005; 44(38): 12746-12758. PMID: 16171389 Pierre.Lavigne@Usherbrooke.ca | ||||
| Ndao M, Keene E, Amos FF, Rewari G, Ponce CB, Estroff L, Evans JS. "Intrinsically disordered mollusk shell prismatic protein that modulates calcium carbonate crystal growth." Biomacromolecules. 2010; 11(10): 2539-44. PMID: 20831150 | ||||
| Neira JL. "The capsid protein of human immunodeficiency virus: molecular recognition and design of antiviral agents." FEBS J.. 2009; 276(21): 6097. PMID: 19825043 | ||||
| Neira JL. "The positively charged C-terminal region of the inactivating Shaker B peptide binds to the potassium channel KcsA." Protein Eng. Des. Sel.. 2009; 22(6): 341-7. PMID: 19329803 | ||||
| Neira JL. "Biophysical and structural studies on the capsid protein of the human immunodeficiency virus type 1: a new drug target?" ScientificWorldJournal. 2009; 9: 404-19. PMID: 19484162 | ||||
| Neira JL, Fersht AR. "Acquisition of native-like interactions in C-terminal fragments of barnase." J. Mol. Biol.. 1999; 287(2): 421-32. PMID: 10080903 | ||||
| Neira JL, Fersht AR. "Exploring the folding funnel of a polypeptide chain by biophysical studies on protein fragments." J. Mol. Biol.. 1999; 285(3): 1309-33. PMID: 9887278 | ||||
| Neira JL, Fersht AR. "An NMR study on the beta-hairpin region of barnase." Fold Des. 1996; 1(3): 231-41. PMID: 9079384 | ||||
| Neira JL, Gómez J. "The conformational stability of the Streptomyces coelicolor histidine-phosphocarrier protein. Characterization of cold denaturation and urea-protein interactions." Eur. J. Biochem.. 2004; 271(11): 2165-81. PMID: 15153107 | ||||
| Neira JL, González C, Toiron C, de Prat-Gay G, Rico M. "Three-dimensional solution structure and stability of thioredoxin m from spinach." Biochemistry. 2001; 40(50): 15246-56. PMID: 11735407 | ||||
| Neira JL, Itzhaki LS, Ladurner AG, Davis B, de Prat Gay G, Fersht AR. "Following co-operative formation of secondary and tertiary structure in a single protein module." J. Mol. Biol.. 1997; 268(1): 185-97. PMID: 9149151 | ||||
| Neira JL, Itzhaki LS, Otzen DE, Davis B, Fersht AR. "Hydrogen exchange in chymotrypsin inhibitor 2 probed by mutagenesis." J. Mol. Biol.. 1997; 270(1): 99-110. PMID: 9231904 | ||||
| Neira JL, Mateu MG. "Hydrogen exchange of the tetramerization domain of the human tumour suppressor p53 probed by denaturants and temperature." Eur. J. Biochem.. 2001; 268(18): 4868-77. PMID: 11559355 | ||||
| Neira JL, Rico M. "Folding studies on ribonuclease A, a model protein." Fold Des. 1997; 2(1): R1-11. PMID: 9080194 | ||||
| Neira JL, Román-Trufero M, Contreras LM, Prieto J, Singh G, Barrera FN, Renart ML, Vidal M. "The transcriptional repressor RYBP is a natively unfolded protein which folds upon binding to DNA." Biochemistry. 2009; 48(6): 1348-60. PMID: 19170609 | ||||
| Neira JL, Sevilla P, Menéndez M, Bruix M, Rico M. "Hydrogen exchange in ribonuclease A and ribonuclease S: evidence for residual structure in the unfolded state under native conditions." J. Mol. Biol.. 1999; 285(2): 627-43. PMID: 9878434 | ||||
| Neira JL, Vázquez E, Fersht AR. "Stability and folding of the protein complexes of barnase." Eur. J. Biochem.. 2000; 267(10): 2859-70. PMID: 10806383 | ||||
| Nelson WD, Blakely SE, Nesmelov YE, Thomas DD. "Site-directed spin labeling reveals a conformational switch in the phosphorylation domain of smooth muscle myosin." Proc Natl Acad Sci U S A. 2005; 102(11): 4000-5. PMID: 15753305 | ||||
| Neri M, Anselmi C, Cascella M, Maritan A, Carloni P. "Coarse-grained model of proteins incorporating atomistic detail of the active site." Phys Rev Lett. 2005; 95(21): 218102. PMID: 16384187 | ||||
| Nett JH, Hunte C, Trumpower BL. "Changes to the length of the flexible linker region of the Rieske protein impair the interaction of ubiquinol with the cytochrome bc1 complex." Eur J Biochem. 2000; 267(18): 5777-82. PMID: 10971589 | ||||
| Neuberger G, Schneider G, Eisenhaber F. "pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model." Biol Direct. 2007; 2: 1. PMID: 17222345 | ||||
| Neuweiler H, Doose S, Sauer M. "A microscopic view of miniprotein folding: enhanced folding efficiency through formation of an intermediate." Proc Natl Acad Sci U S A. 2005; 102(46): 16650-5. PMID: 16269542 | ||||
| Newton CH, Shimmin LC, Yee J, Dennis PP. "A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein." J Bacteriol. 1990; 172(2): 579-588. PMID: 2404943 | ||||
| Neyroz P, Zambelli B, Ciurli S. "Intrinsically disordered structure of Bacillus pasteurii UreG as revealed by steady-state and time-resolved fluorescence spectroscopy." Biochemistry. 2006; 45(29): 8918-30. PMID: 16846235 stefano.ciurli@unibo.it | ||||
| Ng JD, Ko TP, McPherson A. "Cloning, expression, and crystallization of jack bean (Canavalia ensiformis) canavalin." Plant Physiol. 1993; 101(3): 713-28. PMID: 8310055 | ||||
| Ng KP, Potikyan G, Savene RO, Denny CT, Uversky VN, Lee KA. "Multiple aromatic side chains within a disordered structure are critical for transcription and transforming activity of EWS family oncoproteins." Proc Natl Acad Sci U S A. 2007; 104(2): 479-84. PMID: 17202261 | ||||
| Nguyen BD, Abbott KL, Potempa K, Kobor MS, Archambault J, Greenblatt J, Legault P, Omichinski JG. "NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1." Proc Natl Acad Sci U S A. 2003; 100(10): 5688-93. PMID: 12732728 | ||||
| Nguyen HD, Hall CK. "Spontaneous fibril formation by polyalanines; discontinuous molecular dynamics simulations." J Am Chem Soc. 2006; 128(6): 1890-901. PMID: 16464090 | ||||
| Nguyen PH, Stock G, Mittag E, Hu CK, Li MS. "Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study." Proteins. 2005; 61(4): 795-808. PMID: 16240446 | ||||
| Nicastro G, Menon RP, Masino L, Knowles PP, McDonald NQ, Pastore A. "The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition." Proc Natl Acad Sci U S A. 2005; 102(30): 10493-8. PMID: 16020535 | ||||
| Nicely NI, Kosak J, de Serrano V, Mattos C. "Crystal structures of Ral-GppNHp and Ral-GDP reveal two binding sites that are also present in Ras and Rap." Structure. 2004; 12(11): 2025-36. PMID: 15530367 | ||||
| Nicolas O Laliberté JF. "The complete nucleotide sequence of turnip mosaic potyvirus RNA." The Journal of General Virology. 1992; 73(Pt. 11): 2785-93. | ||||
| Nicolas O, Laliberté JF. "The complete nucleotide sequence of turnip mosaic potyvirus RNA." J Gen Virol. 1992; 73(11): 2785-93. PMID: 1431807 | ||||
| Nicolet Y, Piras C, Legrand P, Hatchikian CE, Fontecilla-Camps JC. "Desulfovibrio desulfuricans iron hydrogenase: the structure shows unusual coordination to an active site Fe binuclear center." Structure Fold Des. 1999; 7(1): 13-23. PMID: 10368269 | ||||
| Nicoll AJ, Weston CJ, Cureton C, Ludwig C, Dancea F, Spencer N, Smart OS, Gunther UL, Allemann RK. "De novo design of a stable N-terminal helical foldamer." Org Biomol Chem. 2005; 3(24): 4310-5. PMID: 16327890 | ||||
| Nielbo S, Thomsen JK, Graversen JH, Jensen PH, Etzerodt M, Poulsen FM, Thogersen HC. "Structure of the plasminogen kringle 4 binding calcium-free form of the C-type lectin-like domain of tetranectin." Biochemistry. 2004; 43(27): 8636-8643. PMID: 15236571 | ||||
| Nielsen BB, Kauppi B, Thelander M, Thelander L, Larsen IK, Eklund H. "Crystallization and crystallographic investigations of the small subunit of mouse ribonucleotide reductase." FEBS Lett. 1995; 373(3): 310-2. PMID: 7589490 | ||||
| Nielsen, M. S. Vorum, H. Lindersson, E. Jensen, P. H. "Ca2+ binding to alpha-synuclein regulates ligand binding and oligomerization." J Biol Chem. 2001; 276(25): 22680-22684. PMID: 11312271 | ||||
| Nilsson N, Malmborg AC, Borrebaeck CA. "The phage infection process: a functional role for the distal linker region of bacteriophage protein 3." J Virol. 2000; 74(9): 4229-35. PMID: 10756036 | ||||
| Nimmo GA, Cohen P. "The regulation of glycogen metabolism. Purification and characterisation of protein phosphatase inhibitor-1 from rabbit skeletal muscle." Eur J Biochem. 1978; 87(2): 341-51. PMID: 208844 | ||||
| Nishimura C, Dyson HJ, Wright PE. "Identification of native and non-native structure in kinetic folding intermediates of apomyoglobin." J Mol Biol. 2006; 355(1): 139-56. PMID: 16300787 | ||||
| Nishimura C, Uversky VN, Fink AL. "Effect of salts on the stability and folding of staphylococcal nuclease." Biochemistry. 2001; 40(7): 2113-28. PMID: 11329280 | ||||
| Nishino T, Tsushima K. "Purification of highly active milk xanthine oxidase by affinity chromatography on Sepharose 4B/folate gel." FEBS Lett. 1981; 131(2): 369-72. PMID: 6895359 | ||||
| Nishio K, Morimoto Y, Ishizuka M, Ogasahara K, Tsukihara T, Yutani K. "Conformational changes in the alpha-subunit coupled to binding of the beta 2-subunit of tryptophan synthase from Escherichia coli: crystal structure of the tryptophan synthase alpha-subunit alone." Biochemistry. 2005; 44(4): 1184-92. PMID: 15667212 | ||||
| Nishio M, Tsurudome M, Kawano M, Watanabe N, Ohgimoto S, Ito M, Komada H, Ito Y. "Interaction between nucleocapsid protein (NP) and phosphoprotein (P) of human parainfluenza virus type 2: one of the two NP binding sites on P is essential for granule formation." J Gen Virol. 1996; 77(Pt 10): 2457-63. PMID: 8887478 | ||||
| Nixon RA, Lewis SE. "Differential turnover of phosphate groups on neurofilament subunits in mammalian neurons in vivo." J Biol Chem. 1986; 261(35): 16298-301. PMID: 3782120 | ||||
| Noam Adir and Rina Anati. "Crystallization of dimers of the manganese-stabilizing protein of Photosystem II." Photosynthesis Research. 2000; 64: 167-177. | ||||
| Nobe M, Kuroda N, Dobashi T, Yamamoto T, Konno A, Nakata M. "Molecular weight effect on liquid crystalline gel formation of curdlan." Biomacromolecules. 2005; 6(6): 3373-9. PMID: 16283768 | ||||
| Noda A, Ning Y, Venable SF, Pereira-Smith OM, Smith JR. "Cloning of senescent cell-derived inhibitors of DNA synthesis using an expression screen." Exp Cell Res. 1994; 211(1): 90-8. PMID: 8125163 | ||||
| Nodet G, Salmon L, Ozenne V, Meier S, Jensen MR, Blackledge M. "Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings." J Am Chem Soc. 2009; 131(49): 17908-18. PMID: 19908838 | ||||
| Nogales E, Wolf SG, Downing KH. "Structure of the alpha beta tubulin dimer by electron crystallography." Nature. 1998; 391(6663): 199-203. PMID: 9428769 | ||||
| Noivirt-Brik O, Prilusky J, Sussman JL. "Assessment of disorder predictions in CASP8." Proteins. 2009; 77 Suppl 9: 210-6. PMID: 19774619 | ||||
| Nölting B, Golbik R, Neira JL, Soler-Gonzalez AS, Schreiber G, Fersht AR. "The folding pathway of a protein at high resolution from microseconds to seconds." Proc. Natl. Acad. Sci. U.S.A.. 1997; 94(3): 826-30. PMID: 7563082 | ||||
| Nord J, Nyman P, Larsson G, Drakenberg T. "The C-terminus of dUTPase: observation on flexibility using NMR." FEBS Lett. 2001; 492(3): 228-32. PMID: 11257499 | ||||
| Norman AW, Adams D, Collins ED, Okamura WH, Fletterick RJ. "Three-dimensional model of the ligand binding domain of the nuclear receptor for 1alpha,25-dihydroxy-vitamin D(3)." J Cell Biochem. 1999; 74(3): 323-333. PMID: 10412035 | ||||
| Noy E, Goldblum A. "Flexible protein-protein docking based on Best-First search algorithm." J Comput Chem. . PMID: 20087902 | ||||
| Nyarko A, Hare M, Hays TS, Barbar E. "The intermediate chain of cytoplasmic dynein is partially disordered and gains structure upon binding to light-chain LC8." Biochemistry. 2004; 43(49): 15595-603. PMID: 15581372 barbare@science.oregonstate.edu | ||||
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