This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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Paci E, Greene LH, Jones RM, Smith LJ. "Characterization of the molten globule state of retinol-binding protein using a molecular dynamics simulation approach." Febs J. 2005; 272(18): 4826-38. PMID: 16156801
Padmanabhan S, Elias-Arnanz M, Carpio E, Aparicio P, Murillo FJ. "Domain architecture of a high mobility group A-type bacterial transcriptional factor." J Biol Chem. 2001; 276(45): 41566-75. PMID: 11533063
Pagliaro M, Ciriminna R, Wong Chi Man M, Campestrini S. "Better chemistry through ceramics: the physical bases of the outstanding chemistry of ORMOSIL." J Phys Chem B Condens Matter Mater Surf Interfaces Biophys. 2006; 110(5): 1976-88. PMID: 16471772
Pahel G, Aulabaugh A, Short SA, Barnes JA, Painter GR, Ray P, Phelps WC. "Structural and functional characterization of the HPV16 E7 protein expressed in bacteria." J Biol Chem. 1993; 268(34): 26018-25. PMID: 8245034
Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le Trong I, Teller DC, Okada T, Stenkamp RE, Yamamoto M, Miyano M. "Crystal structure of rhodopsin: A G protein-coupled receptor." Science. 2000; 289(5480): 739-45. PMID: 10926528
Paleos CM, Tsiourvas D. "Interaction between complementary liposomes: a process leading to multicompartment systems formation." J Mol Recognit. 2006; 19(1): 60-7. PMID: 16312020
Pande V, Ramos MJ. "Molecular recognition of 15-deoxy-delta(12,14)-prostaglandin J2 by nuclear factor-kappa B and other cellular proteins." Bioorg Med Chem Lett. 2005; 15(18): 4057-63. PMID: 16006125
Pandey N, Ganapathi M, Kumar K, Dasgupta D, Das Sutar SK, Dash D. "Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins." Bioinformatics. 2004; 20(17): 2904-10. PMID: 15238363
Pandey N, Mittal U, Srivastava AK, Mukerji M. "SMARCA2 and THAP11: potential candidates for polyglutamine disorders as evidenced from polymorphism and protein-folding simulation studies." J Hum Genet. 2004; 49(11): 596-602. PMID: 15368101
Pang SS, Duggleby RG, Guddat LW. "Crystal structure of yeast acetohydroxyacid synthase: a target for herbicidal inhibitors." J Mol Biol. 2002; 317(2): 249-62. PMID: 11902841
Pantano S, Marcello A, Ferrari A, Gaudiosi D, Sabo A, Pellegrini V, Beltram F, Giacca M, Carloni P. "Insights on HIV-1 Tat:P/CAF bromodomain molecular recognition from in vivo experiments and molecular dynamics simulations." Proteins. 2006; 62(4): 1062-73. PMID: 16362936
Pantazatos D, Kim JS, Klock HE, Stevens RC, Wilson IA, Lesley SA, Woods VL Jr. "Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS." Proc Natl Acad Sci U S A. 2004; 101(3): 751-6. PMID: 14715906
Panton LJ, McPhie P, Maloy WL, Wellems TE, Taylor DW, Howard RJ. "Purification and partial characterization of an unusual protein of Plasmodium falciparum: histidine-rich protein II." Mol Biochem Parasitol. 1989; 35(2): 149-160. PMID: 2671720
Pantos A, Tsiourvas D, Nounesis G, Paleos CM. "Interaction of functional dendrimers with multilamellar liposomes: design of a model system for studying drug delivery." Langmuir. 2005; 21(16): 7483-90. PMID: 16042483
Pantos A, Tsiourvas D, Paleos CM, Nounesis G. "Enhanced drug transport from unilamellar to multilamellar liposomes induced by molecular recognition of their lipid membranes." Langmuir. 2005; 21(15): 6696-702. PMID: 16008376
Pan YC, Silverberg AB, Harris SE, Li SS. "Complete amino acid sequence of a major secretory protein from rat seminal vesicle." Int J Pept Protein Res. 1980; 16: 143-146. PMID: 7007263
Papadopoulos E, Oglecka K, Maler L, Jarvet J, Wright PE, Dyson HJ, Graslund A. "NMR Solution Structure of the Peptide Fragment 1-30, Derived from Unprocessed Mouse Doppel Protein, in DHPC Micelles." Biochemistry. 2006; 45(1): 159-166. PMID: 16388591
Papoian GA, Ulander J, Wolynes PG. "Role of water mediated interactions in protein-protein recognition landscapes." J Am Chem Soc. 2003; 125(30): 9170-8. PMID: 15369374
Papoian GA, Wolynes PG. "The physics and bioinformatics of binding and folding-an energy landscape perspective." Biopolymers. 2003; 68(3): 333-49. PMID: 12601793
Paris C, Lecomte S, Coupry C. "ATR-FTIR spectroscopy as a way to identify natural protein-based materials, tortoiseshell and horn, from their protein-based imitation, galalith." Spectrochim Acta A Mol Biomol Spectrosc. 2005; 62(1-3): 532-8. PMID: 16257757
Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG. "Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18." Nature. 2001; 413(6858): 848-52. PMID: 11677608
Park IK, Roach P, Bondor J, Fox SP, DePaoli-Roach AA. "Molecular mechanism of the synergistic phosphorylation of phosphatase inhibitor-2. Cloning, expression, and site-directed mutagenesis of inhibitor-2." J Biol Chem. 1994; 269(2): 944-54. PMID: 8288648
Park JW, Je BR, Piao S, Inamura S, Fujimoto Y, Fukase K, Kusumoto S, Ha NC, Soderhall K, Ha NC, Lee BL. "A synthetic peptidoglycan fragment as a competitive inhibitor of the melanization cascade." J Biol Chem. 2006. PMID: 16421099
Park MS. "Expression of human RAD52 confers resistance to ionizing radiation in mammalian cells." J Biol Chem. 1995; 270(26): 15467-70. PMID: 7797537
Parks CL, Lerch RA, Walpita P, Wang HP, Sidhu MS, Udem SA. "Comparison of predicted amino acid sequences of measles virus strains in the Edmonston vaccine lineage." J Virol. 2001; 75(2): 910-20. PMID: 11134304
Park SJ, Lee SK, Lee BJ. "Effect of tandem rare codon substitution and vector-host combinations on the expression of the EBV gp110 C-terminal domain in Escherichia coli." Protein Expr Purif. 2002; 24(3): 470-80. PMID: 11922764
Park SJ, Seo MD, Lee SK, Ikeda M, Longnecker R, Lee BJ. "Expression and characterization of N-terminal domain of Epstein-Barr virus latent membrane protein 2A in Escherichia coli." Protein Expr Purif. 2005; 41(1): 9-17. PMID: 15802216
Park SM, Jung HY, Chung KC, Rhim H, Park JH, Kim J. "Stress-induced aggregation profiles of GST-alpha-synuclein fusion proteins: role of the C-terminal acidic tail of alpha-synuclein in protein thermosolubility and stability." Biochemistry. 2002; 41(12): 4137-46. PMID: 11900557
Parraga G, Horvath SJ, Eisen A, Taylor WE, Hood L, Young ET, Klevit RE. "Zinc-dependent structure of a single-finger domain of yeast ADR1." Science. 1988; 241(4872): 1489-92. PMID: 3047872
Partch CL, Clarkson MW, Ozgur S, Lee AL, Sancar A. "Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor." Biochemistry. 2005; 44(10): 3795-805. PMID: 15751956
Partch CL, Sancar A. "Photochemistry and photobiology of cryptochrome blue-light photopigments: the search for a photocycle." Photochem Photobiol. 2005; 81(6): 1291-304. PMID: 16164372
Parthasarathy S, Murthy MR. "Protein thermal stability: insights from atomic displacement parameters (B values)." Protein Eng. 2000; 13(1): 9-13. PMID: 10679524
Pascal C, Bigey F, Ratomahenina R, Boze H, Moulin G, Sarni-Manchado P. "Overexpression and characterization of two human salivary proline rich proteins." Protein Expr Purif. 2006; 47(2): 524-532. PMID: 16529944
Pasta SY, Raman B, Ramakrishna T, Rao ChM. "Role of the C-terminal extensions of alpha-crystallins. Swapping the C-terminal extension of alpha-crystallin to alphaB-crystallin results in enhanced chaperone activity." J Biol Chem. 2002; 277(48): 45821-8. PMID: 12235146
Patenaude SI, Seto NO, Borisova SN, Szpacenko A, Marcus SL, Palcic MM, Evans SV. "The structural basis for specificity in human ABO(H) blood group biosynthesis." Nat Struct Biol. 2002; 9(9): 685-90. PMID: 12198488
Patti JM, Boles JO, Hook M. "Identification and biochemical characterization of the ligand binding domain of the collagen adhesin from Staphylococcus aureus." Biochemistry. 1993; 32(42): 11428-35. PMID: 8218209
Paunola E, Mattila PK, Lappalainen P. "WH2 domain: a small, versatile adapter for actin monomers." FEBS Letters. ; 513(1): 92-7. PMID: 11911886
Pavlov NA, Cherny DI, Heim G, Jovin TM, Subramaniam V. "Amyloid fibrils from the mammalian protein prothymosin alpha." FEBS Lett. 2002; 517(1-3): 37-40. PMID: 12062405
Pawlowski K, Rychlewski L, Zhang B, Godzik A. "Fold predictions for bacterial genomes." J Struct Biol. 2001; 134(2-3): 219-31. PMID: 11551181
Pawson T, Linding R. "Synthetic modular systems--reverse engineering of signal transduction." FEBS Lett. 2005; 579(8): 1808-14. PMID: 15763556
Paz A, Zeev-Ben-Mordehai T, Lundqvist M, Sherman E, Mylonas E, Weiner L, Haran G, Svergun D, Mulder F, Sussman J, Silman I. "Biophysical characterization of the unstructured cytoplasmic domain of the human neuronal adhesion protein neuroligin 3." Biophys J. 2008; 95(4): 1928-44. PMID: 18456828
Peacock RS, Weljie AM, Howard SP, Price FD, and Vogel HJ. "The Solution Structure of the C-terminal Domain of TonB and Interaction Studies with TonB Box Peptides." J Mol Biol. 2005; 345(5): 1185-97. PMID: 15644214
Peat TS, Frank EG, McDonald JP, Levine AS, Woodgate R, Hendrickson WA. "The UmuD' protein filament and its potential role in damage induced mutagenesis." Structure. 1996; 4(12): 1401-12. PMID: 8994967
Peat TS, Frank EG, McDonald JP, Levine AS, Woodgate R, Hendrickson WA. "Structure of the UmuD' protein and its regulation in response to DNA damage." Nature. 1996; 380(6576): 727-30. PMID: 8614470
Pedersen LC, Dong J, Taniguchi F, Kitagawa H, Krahn JM, Pedersen LG, Sugahara K, Negishi M. "Crystal structure of an alpha 1,4-N-acetylhexosaminyltransferase (EXTL2), a member of the exostosin gene family involved in heparan sulfate biosynthesis." J Biol Chem. 2003; 278(16): 14420-8. PMID: 12562774
Pe'er I, Felder CE, Man O, Silman I, Sussman JL, Beckmann JS. "Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla." Proteins. 2004; 54(1): 20-40. PMID: 14705021
Pei J, Wang Q, Liu Z, Li Q, Yang K, Lai L. "PSI-DOCK: Towards highly efficient and accurate flexible ligand docking." Proteins. 2006. PMID: 16395666
Peneff C, Ferrari P, Charrier V, Taburet Y, Monnier C, Zamboni V, Winter J, Harnois M, Fassy F, Bourne Y. "Crystal structures of two human pyrophosphorylase isoforms in complexes with UDPGlc(Gal)NAc: role of the alternatively spliced insert in the enzyme oligomeric assembly and active site architecture." Embo J. 2001; 20(22): 6191-202. PMID: 11707391
Penin F, Brass V, Appel N, Ramboarina S, Montserret R, Ficheux D, Blum HE, Bartenschlager R, Moradpour D. "Structure and function of the membrane anchor domain of hepatitis C virus nonstructural protein 5A." J. Biol. Chem.. 2004; 279(39): 40835-43. PMID: 15247283
Penkett CJ, Dobson CM, Smith LJ, Bright JR, Pickford AR, Campbell ID, Potts JR. "Identification of residues involved in the interaction of Staphylococcus aureus fibronectin-binding protein with the (4)F1(5)F1 module pair of human fibronectin using heteronuclear NMR spectroscopy." Biochemistry. 2000; 39(11): 2887-93. PMID: 10715108
Penkett CJ, Redfield C, Dodd I, Hubbard J, McBay DL, Mossakowska DE, Smith RA, Dobson CM, Smith LJ. "NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein." J Mol Biol. 1997; 274(2): 152-9. PMID: 9398523
Penkett CJ, Redfield C, Jones JA, Dodd I, Hubbard J, Smith RA, Smith LJ, Dobson CM. "Structural and dynamical characterization of a biologically active unfolded fibronectin-binding protein from Staphylococcus aureus." Biochemistry. 1998; 37(48): 17054-67. PMID: 9836601
Pennacchio LA, Lehesjoki AE, Stone NE, Willour VL, Virtaneva K, Miao J, D'Amato E, Ramirez L, Faham M, Koskiniemi M, Warrington JA, Norio R, de la Chapelle A, Cox DR, Myers RM. "Mutations in the gene encoding cystatin B in progressive myoclonus epilepsy (EPM1)." Science. 1996; 271(5256): 1731-4. PMID: 8596935
Pentecost BT, Wright JM, Dixon GH. "Isolation and sequence of cDNA clones coding for a member of the family of high mobility group proteins (HMG-T) in trout and analysis of HMG-T-mRNA's in trout tissues." Nucleic Acids Res. 1985; 13(13): 4871-4888. PMID: 4022777
Perederina A, Svetlov V, Vassylyeva MN, Tahirov TH, Yokoyama S, Artsimovitch I, Vassylyev DG. "Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription." Cell. 2004; 118(3): 297-309. PMID: 15294156
Perez EM, Sanchez L, Fernandez G, Martin N. "exTTF as a Building Block for Fullerene Receptors. Unexpected Solvent-Dependent Positive Homotropic Cooperativity." J Am Chem Soc. 2006; 128(22): 7172-3. PMID: 16734465
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Permyakov SE, Bakunts AG, Denesyuk AI, Knyazeva EL, Uversky VN, Permyakov EA. "Apo-parvalbumin as an intrinsically disordered protein." Proteins. 2008. PMID: 18260106
Permyakov SE, Millett IS, Doniach S, Permyakov EA, Uversky VN. "Natively unfolded C-terminal domain of caldesmon remains substantially unstructured after the effective binding to calmodulin." Proteins. 2003; 53(4): 855-862. PMID: 14635127
Permyakov SE, Pershikova IV, Khokhlova TI, Uversky VN, Permyakov EA. "No need to be HAMLET or BAMLET to interact with histones: binding of monomeric alpha-lactalbumin to histones and basic poly-amino acids." Biochemistry. 2004; 43(19): 5575-82. PMID: 15134431
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Prevete N, Rossi FW, Triggiani M, Marone G, de Paulis A, Metafora V, De Maria S, Carteni M, Ragone R, Ravagnan G, Metafora S. "Antiapoptotic Seminal Vesicle Protein IV Induces Histamine Release from Human FcepsilonRI+ Cells." Int Arch Allergy Immunol. 2009; 151(4): 318-330. PMID: 19851073
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