Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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Vacic V, Iakoucheva LM, Lonardi S, Radivojac P. "Graphlet Kernels for Prediction of Functional Residues in Protein Structures." J Comput Biol. ; 17(1): 55-72. PMID: 20078397
 
Vagt T, Zschornig O, Huster D, Koksch B. "Membrane Binding and Structure of De Novo Designed alpha-Helical Cationic Coiled-Coil-Forming Peptides." Chemphyschem. 2006; 7(6): 1361-1371. PMID: 16680794
 
Valdivia MM, Avila J, Coll J, Colaco C, Sandoval IV. "Quantitation and characterization of the microtubule associated MAP2 in porcine tissues and its isolation from porcine (PK15) and human (HeLa) cell lines." Biochem Biophys Res Commun. 1982; 105(4): 1241-1249. PMID: 7049162
 
Valenzuela P, Quiroga M, Zaldivar J, Rutter WJ, Kirschner MW, Cleveland DW. "Nucleotide and corresponding amino acid sequences encoded by alpha and beta tubulin mRNAs." Nature. 1981; 289(5799): 650-655. PMID: 7464932
 
Vamvaca K, Vogeli B, Kast P, Pervushin K, Hilvert D. "An enzymatic molten globule: efficient coupling of folding and catalysis." Proc Natl Acad Sci U S A. 2004; 101(35): 12860-4. PMID: 15322276 hilvert@org.chem.ethz.ch
 
Van Gilst MR, von Hippel PH. "Assembly of the N-dependent antitermination complex of phage lambda: NusA and RNA bind independently to different unfolded domains of the N protein." J Mol Biol. 1997; 274(2): 160-73. PMID: 9398524
 
Vanhooke JL, Benning MM, Bauer CB, Pike JW, DeLuca HF. "Molecular structure of the rat vitamin D receptor ligand binding domain complexed with 2-carbon-substituted vitamin D3 hormone analogues and a LXXLL-containing coactivator peptide." Biochemistry. 2004; 43(14): 4101-4110. PMID: 15065852
 
Vanzo NF, Li YS, Py B, Blum E, Higgins CF, Raynal LC, Krisch HM, Carpousis AJ. "Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome." Genes Dev. 1998; 12(17): 2770-2781. PMID: 9732274
 
Varshney S, Goldblum RM, Auton M, Kearney C, Watanabe M, Midoro-Horiuti T. "Major mountain cedar allergen, Jun a 1, contains conformational as well as linear IgE epitopes." Mol Immunol. 2006. PMID: 16423400
 
Varshney V, Carri GA. "Coupling between helix-coil and coil-globule transitions in helical polymers." Phys Rev Lett. 2005; 95(16): 168304. PMID: 16241848
 
Varughese S, Pedireddi VR. "A competitive molecular recognition study: syntheses and analysis of supramolecular assemblies of 3,5-dihydroxybenzoic acid and its bromo derivative with some N-donor compounds." Chemistry. 2006; 12(6): 1597-609. PMID: 16250059
 
Vasseur S, Vidal Mallo G, Fiedler F, Bodeker H, Canepa E, Moreno S, Iovanna JL. "Cloning and expression of the human p8, a nuclear protein with mitogenic activity." Eur J Biochem. 1999; 259(3): 670-5. PMID: 10092851
 
Vassylyev DG, Takeda S, Wakatsuki S, Maeda K, Maéda Y. "Crystal structure of troponin C in complex with troponin I fragment at 2.3-A resolution." Proc Natl Acad Sci U S A. 1998; 95(9): 4847-52. PMID: 9560191
 
Vaughan JM, Rivier J, Spiess J, Peng C, Chang JP, Peter RE, Vale W. "Isolation and characterization of hypothalamic growth-hormone releasing factor from common carp, Cyprinus carpio." Neuroendocrinology. 1992; 56(4): 539-49. PMID: 1475012
 
Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R. "Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms." Mol. Biochem. Parasitol.. 2006; 151(1): 100-10. PMID: 17125854
 
Vekrellis K, Rideout HJ, Stefanis L. "Neurobiology of alpha-synuclein." Mol Neurobiol. 2004; 30(1): 1-21. PMID: 15247485
 
Velanker S S, Ray S S, Gokhale R S, Suma S, Balaram H, Balaram P, Murthy M R. "Triosephosphate isomerase from Plasmodium falciparum: the crystal structure provides insights into antimalarial drug design." Structure (London, England : 1993). 1997; 5(6): 751-61. PMID: 9261072
 
Vendel AC, Lumb KJ. "Molecular recognition of the human coactivator CBP by the HIV-1 transcriptional activator Tat." Biochemistry. 2003; 42(4): 910-6. PMID: 12549909
 
Venkitakrishnan RP, Zaborowski E, McElheny D, Benkovic SJ, Dyson HJ, Wright PE. "Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle." Biochemistry. 2004; 43(51): 16046-55. PMID: 15609999
 
Venyaminov SY, Gogia ZV. "Optical characteristics of all individual proteins from the small subunit of Escherichia coli ribosomes." Eur J Biochem. 1982; 126(2): 299-309. PMID: 6751823
 
Veprintsev DB, Freund SM, Andreeva A, Rutledge SE, Tidow H, Canadillas JM, Blair CM, Fersht AR. "Core domain interactions in full-length p53 in solution." Proc Natl Acad Sci U S A. 2006; 103(7): 2115-9. PMID: 16461914
 
Verdone G, Doliana R, Corazza A, Colebrooke SA, Spessotto P, Bot S, Bucciotti F, Capuano A, Silvestri A, Viglino P, Campbell ID, Colombatti A, Esposito G. "The Solution Structure of EMILIN1 Globular C1q Domain Reveals a Disordered Insertion Necessary for Interaction with the {alpha}4{beta}1 Integrin." J Biol Chem. 2008; 283(27): 18947-56. PMID: 18463100
 
Verkhivker GM. "Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: hierarchy of structural loss from all-atom Monte Carlo simulations of p27Kip1 unfolding-unbinding and structural determinants of the binding mechanism." Biopolymers. 2004; 75(5): 420-33. PMID: 15468065
 
Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Freer ST, Rose PW. "Complexity and simplicity of ligand-macromolecule interactions: the energy landscape perspective." Curr Opin Struct Biol. 2002; 12(2): 197-203. PMID: 11959497
 
Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Freer ST, Rose PW. "Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets binding." Proc Natl Acad Sci U S A. 2003; 100(9): 5148-53. PMID: 12697905
 
Versees W, Barlow J, Steyaert J. "Transition-state complex of the purine-specific nucleoside hydrolase of T. vivax: enzyme conformational changes and implications for catalysis." J Mol Biol. 2006; 359(2): 331-46. PMID: 16630632
 
Vetter IR, Parker MW, Tucker AD, Lakey JH, Pattus F, Tsernoglou D. "Crystal structure of a colicin N fragment suggests a model for toxicity." Structure. 1998; 6(7): 863-74. PMID: 9687368
 
Vigil D, Blumenthal DK, Taylor SS, Trewhella J. "Solution scattering reveals large differences in the global structures of type II protein kinase A isoforms." J Mol Biol. 2006; 357(3): 880-9. PMID: 16460759
 
Viglino P, Fogolari F, Formisano S, Bortolotti N, Damante G, Di Lauro R, Esposito G. "Structural study of rat thyroid transcription factor 1 homeodomain (TTF-1 HD) by nuclear magnetic resonance." FEBS Lett.. 1993; 336(3): 397-402. PMID: 8282100
 
Vijayakrishnan S, Qamra R, Verma CS, Sen R, Mande SC. "Cation-mediated interplay of loops in chaperonin-10." J Biomol Struct Dyn. 2006; 23(4): 365-76. PMID: 16363873
 
Vila R, Ponte I, Collado M, Arrondo JL, Jimenez MA, Rico M, Suau P. "DNA-induced alpha-helical structure in the NH2-terminal domain of histone H1." J Biol Chem. 2001; 276(49): 46429-35. PMID: 11584004 pere.suau@uab.es
 
Vila R, Ponte I, Collado M, Arrondo JL, Suau P. "Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA: an infrared spectroscopy study." J Biol Chem. 2001; 276(33): 30898-903. PMID: 11413144
 
Vila R, Ponte I, Jimenez MA, Rico M, Suau P. "A helix-turn motif in the C-terminal domain of histone H1." Protein Sci. 2000; 9(4): 627-36. PMID: 10794405
 
Vila R, Ponte I, Jimenez MA, Rico M, Suau P. "An inducible helix-Gly-Gly-helix motif in the N-terminal domain of histone H1e: a CD and NMR study." Protein Sci. 2002; 11(2): 214-20. PMID: 11790831
 
Vilasi S, Ragone R. "Abundance of intrinsic disorder in SV-IV, a multifunctional androgen-dependent protein secreted from rat seminal vesicle." FEBS J. 2008; 275(4): 763-764. PMID: 18215165
 
Viola CM, Saridakis V, Christendat D. "Crystal structure of chorismate synthase from Aquifex aeolicus reveals a novel beta alpha beta sandwich topology." Proteins. 2004; 54(1): 166-9. PMID: 14705034
 
Violot S, Aghajari N, Czjzek M, Feller G, Sonan GK, Gouet P, Gerday C, Haser R, Receveur-Brechot V. "Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by X-ray diffraction and small angle X-ray scattering." J Mol Biol. 2005; 348(5): 1211-24. PMID: 15854656
 
Vise PD, Baral B, Latos AJ, Daughdrill GW. "NMR chemical shift and relaxation measurements provide evidence for the coupled folding and binding of the p53 transactivation domain." Nucleic Acids Res. 2005; 33(7): 2061-77. PMID: 15824059
 
Vitali J, Ding J, Jiang J, Zhang Y, Krainer AR, Xu RM. "Correlated alternative side chain conformations in the RNA-recognition motif of heterogeneous nuclear ribonucleoprotein A1." Nucleic Acids Res. 2002; 30(7): 1531-8. PMID: 11917013
 
Voegtli WC, Ge J, Perlstein DL, Stubbe J, Rosenzweig AC. "Structure of the yeast ribonucleotide reductase Y2Y4 heterodimer." Proc Natl Acad Sci U S A. 2001; 98(18): 10073-8. PMID: 11526233
 
Vogelsgesang M, Aktories K. "Exchange of Glutamine-217 to Glutamate of Clostridium limosum Exoenzyme C3 Turns the Asparagine-Specific ADP-Ribosyltransferase into an Arginine-Modifying Enzyme." Biochemistry. 2006; 45(3): 1017-25. PMID: 16411778
 
Vogel V. "MECHANOTRANSDUCTION INVOLVING MULTIMODULAR PROTEINS: Converting Force into Biochemical Signals." Annu Rev Biophys Biomol Struct. 2006; 35: 459-88. PMID: 16689645
 
Vogtt K, Winter R. "Pressure-assisted cold denaturation of hen egg white lysozyme: the influence of co-solvents probed by hydrogen exchange nuclear magnetic resonance." Braz J Med Biol Res. 2005; 38(8): 1185-93. PMID: 16082458
 
Vollhardt D, Liu F, Rudert R. "Molecular recognition of dissolved pyrimidine derivatives by a dialkyl melamine-type monolayer." Chemphyschem. 2005; 6(7): 1246-50. PMID: 15991267
 
Vollmer AP, Probstein RF, Gilbert R, Thorsen T. "Development of an integrated microfluidic platform for dynamic oxygen sensing and delivery in a flowing medium." Lab Chip. 2005; 5(10): 1059-66. PMID: 16175261
 
Volynskaya AV, Kasumov EA, Goldanskii VI. "An evidence for the equilibrium unfolding intermediates of ribonuclease A by tritium labeling method." Int J Biol Macromol. 2006. PMID: 16712923
 
Vonderviszt F, Kanto S, Aizawa S, Namba K. "Terminal regions of flagellin are disordered in solution." J Mol Biol. 1989; 209(1): 127-33. PMID: 2810365
 
Voronova A, Meyer-Klaucke W, Meyer T, Rompel A, Krebs B, Kazantseva J, Sillard R, Palumaa P. "Oxidative switches in functioning of mammalian copper chaperone Cox17." Biochem J. 2007; 408(1): 139-48. PMID: 17672825
 
Vucetic S, Brown CJ, Dunker AK, Obradovic Z. "Flavors of protein disorder." Proteins. 2003; 52(4): 573-84. PMID: 12910457 zoran@ist.temple.edu
 
Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK. "DisProt: a database of protein disorder." Bioinformatics. 2005; 21(1): 137-40. PMID: 15310560 kedunker@iupui.edu
 
 
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