DP00134: Fragile X mental retardation 1 proteinFASTA viewXML view

General information
DisProt:DP00134
Name:Fragile X mental retardation 1 protein
Synonym(s):FMR1_HUMAN
Protein FMR-1
FMRP
First appeared in release:Release 3.0 (02/17/2006)
UniProt:Q06787
UniGene:Hs.103183
SwissProt: FMR1_HUMAN
TrEMBL:  
NCBI (GI): 544328
Source organism:Homo sapiens (Human)
Sequence length:632
Percent disordered:41%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
MEELVVEVRG SNGAFYKAFV KDVHEDSITV AFENNWQPDR QIPFHDVRFP PPVGYNKDIN - 60
ESDEVEVYSR ANEKEPCCWW LAKVRMIKGE FYVIEYAACD ATYNEIVTIE RLRSVNPNKP - 120
ATKDTFHKIK LDVPEDLRQM CAKEAAHKDF KKAVGAFSVT YDPENYQLVI LSINEVTSKR - 180
AHMLIDMHFR SLRTKLSLIM RNEEASKQLE SSRQLASRFH EQFIVREDLM GLAIGTHGAN - 240
IQQARKVPGV TAIDLDEDTC TFHIYGEDQD AVKKARSFLE FAEDVIQVPR NLVGKVIGKN - 300
GKLIQEIVDK SGVVRVRIEA ENEKNVPQEE EIMPPNSLPS NNSRVGPNAP EEKKHLDIKE - 360
NSTHFSQPNS TKVQRVLVAS SVVAGESQKP ELKAWQGMVP FVFVGTKDSI ANATVLLDYH - 420
LNYLKEVDQL RLERLQIDEQ LRQIGASSRP PPNRTDKEKS YVTDDGQGMG RGSRPYRNRG - 480
HGRRGPGYTS GTNSEASNAS ETESDHRDEL SDWSLAPTEE ERESFLRRGD GRRRGGGGRG - 540
QGGRGRGGGF KGNDDHSRTD NRPRNPREAK GRTTDGSLQI RVDCNNERSV HTKTLQNTSS - 600
EGSRLRTGKD RNQKKEKPDS VDGQQPLVNG VP



Functional narrative    

"FMR1 is an RNA-binding protein that is either absent or mutated in patients affected by the fragile X syndrome, the most common inherited cause of mental retardation in humans.... The disease is characterized by mental retardation of variable severity, autistic behavior, macroorchidism in adult males, characteristic facial deformity and hyperextensible joints.... Appearance of the syndrome correlates with the presence in the FMR1 gene of a large trinucleotide expansion (CGG) and with hypermethylation of a CpG island within the promoter region. The length of the trinucleotide expansion correlates with clinical severity of the effect. In normal individuals, the FMR1 gene encodes an RNA-binding protein, FMR1. Although the full-length FMR1 protein is a 632-aminoacid protein, several shorter forms have been observed in vivo as a result of alternative splicing of several of the 17 exons present in the gene.... Sequence analysis of the FMR family shows the presence of three potential RNA-binding domains: an RGG motif and two K-homologous (KH) modules. The KH module is an evolutionarily conserved sequence motif of about 70 amino acids." (Adinolfi et al. 1999)

Region 1: 281-422 Region 2: 516-632

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name:KH2 domain
Location:281 - 422
Length:142
Region sequence:

FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPS
NNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRVLVASSVVAGESQKPELKAWQGMVP
FVFVGTKDSIANATVLLDYHLN

Modification type: Fragment
PDB:  
Structural/functional type: Function arises via an order to disorder transition
Functional classes:  
Functional subclasses: Protein-mRNA binding
Detection methods:
  1. Circular dichroism (CD) spectroscopy, far-UV (298 K; 0.1 cm pathlength; 17 microM protein)

  2. Nuclear magnetic resonance (NMR) (300 K; 0.5–1.0 mM samples in 90% H2O/10% D2O)

References:
  1. Adinolfi S, Bagni C, Musco G, Gibson T, Mazzarella L, Pastore A. "Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains." RNA. 1999; 5(9): 1248-58. PubMed: 10496225

Comments:
 



Region 2
Type:Disordered
Name:FCT domain
Location:516 - 632
Length:117
Region sequence:

APTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTD
GSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP

Modification type: Fragment
PDB:  
Structural/functional type: Function arises from the disordered state
Functional classes:  
Functional subclasses: Protein-mRNA binding
Detection methods:
  1. Circular dichroism (CD) spectroscopy, far-UV (298 K; 10 microM protein)

References:
  1. Adinolfi S, Bagni C, Musco G, Gibson T, Mazzarella L, Pastore A. "Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains." RNA. 1999; 5(9): 1248-58. PubMed: 10496225

Comments:
 



References

  1. Zalfa F, Bagni C. "Molecular insights into mental retardation: multiple functions for the Fragile X mental retardation protein?" Curr Issues Mol Biol. 2004; 6(2): 73-88. PubMed: 15119819


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