General information | DisProt: | DP00134 | Name: | Fragile X mental retardation 1 protein | Synonym(s): | FMR1_HUMAN
Protein FMR-1
FMRP
| First appeared in release: | Release 3.0 (02/17/2006) | UniProt: | Q06787 | UniGene: | Hs.103183 | SwissProt: | FMR1_HUMAN | TrEMBL: | | NCBI (GI): | 544328 | Source organism: | Homo sapiens (Human) | Sequence length: | 632 | Percent disordered: | 41% | Homologues: | |
Native sequence |
10 20 30 40 50 60 | | | | | | MEELVVEVRG SNGAFYKAFV KDVHEDSITV AFENNWQPDR QIPFHDVRFP PPVGYNKDIN - 60 ESDEVEVYSR ANEKEPCCWW LAKVRMIKGE FYVIEYAACD ATYNEIVTIE RLRSVNPNKP - 120 ATKDTFHKIK LDVPEDLRQM CAKEAAHKDF KKAVGAFSVT YDPENYQLVI LSINEVTSKR - 180 AHMLIDMHFR SLRTKLSLIM RNEEASKQLE SSRQLASRFH EQFIVREDLM GLAIGTHGAN - 240 IQQARKVPGV TAIDLDEDTC TFHIYGEDQD AVKKARSFLE FAEDVIQVPR NLVGKVIGKN - 300 GKLIQEIVDK SGVVRVRIEA ENEKNVPQEE EIMPPNSLPS NNSRVGPNAP EEKKHLDIKE - 360 NSTHFSQPNS TKVQRVLVAS SVVAGESQKP ELKAWQGMVP FVFVGTKDSI ANATVLLDYH - 420 LNYLKEVDQL RLERLQIDEQ LRQIGASSRP PPNRTDKEKS YVTDDGQGMG RGSRPYRNRG - 480 HGRRGPGYTS GTNSEASNAS ETESDHRDEL SDWSLAPTEE ERESFLRRGD GRRRGGGGRG - 540 QGGRGRGGGF KGNDDHSRTD NRPRNPREAK GRTTDGSLQI RVDCNNERSV HTKTLQNTSS - 600 EGSRLRTGKD RNQKKEKPDS VDGQQPLVNG VP
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Functional narrative |
"FMR1 is an RNA-binding protein that is either absent or mutated in patients affected by the fragile X syndrome, the
most common inherited cause of mental retardation in humans.... The
disease is characterized by mental retardation of variable
severity, autistic behavior, macroorchidism in adult
males, characteristic facial deformity and hyperextensible
joints.... Appearance
of the syndrome correlates with the presence in the
FMR1 gene of a large trinucleotide expansion (CGG)
and with hypermethylation of a CpG island within the
promoter region. The length of the trinucleotide expansion correlates with clinical severity
of the effect. In normal individuals, the FMR1 gene encodes an
RNA-binding protein, FMR1. Although
the full-length FMR1 protein is a 632-aminoacid
protein, several shorter forms have been observed
in vivo as a result of alternative splicing of several of
the 17 exons present in the gene.... Sequence analysis of the FMR family shows the presence
of three potential RNA-binding domains: an RGG
motif and two K-homologous (KH) modules. The KH module is an
evolutionarily conserved sequence motif of about 70
amino acids." (Adinolfi et al. 1999)
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Map of ordered and disordered regions |
Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.
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Region 1 | Type: | Disordered | Name: | KH2 domain | Location: | 281 - 422 | Length: | 142 | Region sequence: |
FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPS NNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRVLVASSVVAGESQKPELKAWQGMVP FVFVGTKDSIANATVLLDYHLN | Modification type: | Fragment
| PDB: | | Structural/functional type: | Function arises via an order to disorder transition | Functional classes: | | Functional subclasses: | Protein-mRNA binding
| Detection methods:
- Circular dichroism (CD) spectroscopy, far-UV (298 K; 0.1 cm pathlength; 17 microM protein)
- Nuclear magnetic resonance (NMR) (300 K; 0.5–1.0 mM samples in 90% H2O/10% D2O)
| References:
- Adinolfi S, Bagni C, Musco G, Gibson T, Mazzarella L, Pastore A. "Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains." RNA. 1999; 5(9): 1248-58. PubMed: 10496225
| Comments:
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Region 2 | Type: | Disordered | Name: | FCT domain | Location: | 516 - 632 | Length: | 117 | Region sequence: |
APTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTD GSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP | Modification type: | Fragment
| PDB: | | Structural/functional type: | Function arises from the disordered state | Functional classes: | | Functional subclasses: | Protein-mRNA binding
| Detection methods:
- Circular dichroism (CD) spectroscopy, far-UV (298 K; 10 microM protein)
| References:
- Adinolfi S, Bagni C, Musco G, Gibson T, Mazzarella L, Pastore A. "Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains." RNA. 1999; 5(9): 1248-58. PubMed: 10496225
| Comments:
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References |
- Zalfa F, Bagni C. "Molecular insights into mental retardation: multiple functions for the Fragile X mental retardation protein?" Curr Issues Mol Biol. 2004; 6(2): 73-88. PubMed: 15119819
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