DP00441: Cyclic nucleotide-gated cation channel beta-1 [Isoform GARP1]FASTA viewXML view

General information
DisProt:DP00441
Name:Cyclic nucleotide-gated cation channel beta-1 [Isoform GARP1]
Synonym(s):CNGB1_BOVIN
Cyclic nucleotide-gated channel beta-1
CNG channel beta-1
Cyclic nucleotide-gated cation channel 4
CNG channel 4
CNG-4
CNG4
Cyclic nucleotide-gated cation channel modulatory subunit
240 kDa protein of rod photoreceptor CNG-channel
Glutamic acid-rich protein
GARP
Cyclic nucleotide-gated cation channel gamma
First appeared in release:Release 3.0 (02/17/2006)
UniProt:Q28181-4
UniGene:Bt.5064
SwissProt: CNGB1_BOVIN
TrEMBL:  
NCBI (GI): 2493749
Source organism:Bos taurus (Bovine)
Sequence length:590
Percent disordered:100%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
MLGWVQRVLP QPPGTPQKTK QEEEGTEPEP ELEPKPETAP EETELEEVSL PPEEPCVGKE - 60
VAAVTLGPQG TQETALTPPT SLQAQVSVAP EAHSSPRGWV LTWLRKGVEK VVPQPAHSSR - 120
PSQNIAAGLE SPDQQAGAQI LGQCGTGGSD EPSEPSRAED PGPGPWLLRW FEQNLEKMLP - 180
QPPKISEGWR DEPTDAALGP EPPGPALEIK PMLQAQESPS LPAPGPPEPE EEPIPEPQPT - 240
IQASSLPPPQ DSARLMAWIL HRLEMALPQP VIRGKGGEQE SDAPVTCDVQ TISILPGEQE - 300
ESHLILEEVD PHWEEDEHQE GSTSTSPRTS EAAPADEEKG EVVEQTPREL PRIQEEKEDE - 360
EEEKEDGEEE EEEGREKEEE EGEEKEEEEG REKEEEEGEK KEEEGREKEE EEGGEKEDEE - 420
GREKEEEEGR GKEEEEGGEK EEEEGRGKEE VEGREEEEDE EEEQDHSVLL DSYLVPQSEE - 480
DQSEESETQD QSEVGGAQTQ GEVGGAQALS EESETQDQSE VGGAQDQSEV GGAQAQGEVG - 540
GAQEQDGVGG AQDQSTSHQE LQEEALADSS GGSFQMSPFE ALQECEALKR



Functional narrative    

The outer segment of vertebrate photoreceptors hosts all the signaling components required for visual transduction. Specific to rod photoreceptors is a set of three glutamic acid-rich proteins (GARPs) as follows: two soluble forms, GARP1 and GARP2, and the N-terminal cytoplasmic domain (GARP' part) of the B1 subunit of the cyclic GMP-gated channel. GARPs have been shown to interact with proteins at the rim of the disc membrane. The function of GARP proteins is linked to their structural disorder. They may provide flexible spacers or linkers tethering the cyclic GMP-gated channel in the plasma membrane to peripherin at the disc rim to produce a stack of rings of these protein complexes along the long axis of the outer segment. GARP proteins could provide the environment needed for protein interactions in the rim region of discs. Subunit of cyclic nucleotide-gated (CNG) channels, nonselective cation channels, which play important roles in both visual and olfactory signal transduction. When associated with CNGA1, it is involved in the regulation of ion flow into the rod photoreceptor outer segment (ROS), in response to light-induced alteration of the levels of intracellular cGMP.

Region 1: 1-590

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name: 
Location:1 - 590
Length:590
Region sequence:

MLGWVQRVLPQPPGTPQKTKQEEEGTEPEPELEPKPETAPEETELEEVSLPPEEPCVGKE
VAAVTLGPQGTQETALTPPTSLQAQVSVAPEAHSSPRGWVLTWLRKGVEKVVPQPAHSSR
PSQNIAAGLESPDQQAGAQILGQCGTGGSDEPSEPSRAEDPGPGPWLLRWFEQNLEKMLP
QPPKISEGWRDEPTDAALGPEPPGPALEIKPMLQAQESPSLPAPGPPEPEEEPIPEPQPT
IQASSLPPPQDSARLMAWILHRLEMALPQPVIRGKGGEQESDAPVTCDVQTISILPGEQE
ESHLILEEVDPHWEEDEHQEGSTSTSPRTSEAAPADEEKGEVVEQTPRELPRIQEEKEDE
EEEKEDGEEEEEEGREKEEEEGEEKEEEEGREKEEEEGEKKEEEGREKEEEEGGEKEDEE
GREKEEEEGRGKEEEEGGEKEEEEGRGKEEVEGREEEEDEEEEQDHSVLLDSYLVPQSEE
DQSEESETQDQSEVGGAQTQGEVGGAQALSEESETQDQSEVGGAQDQSEVGGAQAQGEVG
GAQEQDGVGGAQDQSTSHQELQEEALADSSGGSFQMSPFEALQECEALKR

Modification type: Native
PDB:  
Structural/functional type: Function arises from the disordered state
Function arises via a disorder to order transition
Functional classes: Molecular recognition scavengers
Molecular assembly
Entropic chain
Functional subclasses: Entropic bristle
Protein-protein binding
Detection methods:
  1. Analytical ultracentrifugation (277 K; )

  2. Dynamic light scattering (293 K; )

  3. Circular dichroism (CD) spectroscopy, far-UV (pH: 7.5; DDM 0.25 mM; Glycerol 5 %; Na2SO4 100 mM; Tris-HCl 5 mM)

  4. Nuclear magnetic resonance (NMR) (pH: 5.2; NaCl 120 mM; Na+ phosphate 10 mM)

  5. Size exclusion/gel filtration chromatography

References:
  1. Batra-Safferling R, Abarca Heidemann K, Korschen HG, Tziatzios C, Stoldt M, Budyak I, Willbold D, Schwalbe H, Klein-Seetharaman J, Kaupp UB. "Glutamic acid-rich proteins of rod photoreceptors are natively unfolded." J Biol Chem. 2006; 281(3): 1449-60. PubMed: 16280326

Comments:
 



References

  1. Batra-Safferling R, Abarca Heidemann K, Korschen HG, Tziatzios C, Stoldt M, Budyak I, Willbold D, Schwalbe H, Klein-Seetharaman J, Kaupp UB. "Glutamic acid-rich proteins of rod photoreceptors are natively unfolded." J Biol Chem. 2006; 281(3): 1449-60. PubMed: 16280326


If you have any comments or wish to provide additional references to this protein or its disordered region(s), please click here to e-mail us.


Disprot-footer
Contact us