DP00066_C001: Capsid proteinFASTA viewXML view

General information
DisProt:DP00066_C001
Name:Capsid protein
Synonym(s):POLS_SINDO
Coat protein
C
Cleavage product 1 of Structural polyprotein
First appeared in release:Release 1.0 (08/01/2003)
UniProt:P27285
UniGene: 
SwissProt: POLS_SINDO
TrEMBL:  
NCBI (GI): 130578
Source organism:Sindbis virus subtype Ockelbo (strain Edsbyn 82-5)(OCKV)(Ockelbo virus)
Sequence length:264
Percent disordered:43%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
MNRGFFNMLG RRPFPAPTAM WRPRRRRQAA PMPARNGLAS QIQQLTTAVS ALVIGQATRP - 60
QNPRPRPPPR QKKQAPKQPP KPKKPKPQEK KKKQPAKTKP GKRQRMALKL EADRLFDVKN - 120
EDGDVIGHAL AMEGKVMKPL HVKGTIDHPV LSKLKFTKSS AYDMEFAQLP VNMRSEAFTY - 180
TSEHPEGFYN WHHGAVQYSG GRFTIPRGVG GRGDSGRPIM DNSGRVVAIV LGGADEGTRT - 240
ALSVVTWNSK GKTIKTTPEG TEEW



Functional narrative    

Capsid protein possesses a protease activity that results in its autocatalytic cleavage from the nascent structural protein. Following its self-cleavage, the capsid protein transiently associates with ribosomes, and within several minutes the protein binds to viral RNA and rapidly assembles into icosaedric core particles. The resulting nucleocapsid eventually associates with the cytoplasmic domain of E2 at the cell membrane, leading to budding and formation of mature virions. New virions attach to target cells, and after endocytosis their membrane fuses with the target cell membrane. This leads to the release of the nucleocapsid into the cytoplasm, followed by an uncoating event necessary for the genomic RNA to become accessible. The uncoating might be triggered by the interaction of capsid proteins with ribosomes. Binding of ribosomes would release the genomic RNA since the same region is genomic RNA-binding and ribosome-binding. Capsid protein is Cleavage product 1 of Structural polyprotein, comprised of aa 1-264 of the polyprotein.

Region 1: 1-113

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name:N-terminal
Location:1 - 113
Length:113
Region sequence:

MNRGFFNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRP
QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEAD

Modification type: Native
PDB:  
Structural/functional type:  
Functional classes:  
Functional subclasses: Protein-genomic RNA binding
Detection methods:
  1. X-ray crystallography (Siemans (area detector))

References:
  1. Choi HK, Tong L, Minor W, Dumas P, Boege U, Rossmann MG, Wengler G. "Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion." Nature. 1991; 354(6348): 37-43. PubMed: 1944569

Comments:
 



References

  1. Choi HK, Tong L, Minor W, Dumas P, Boege U, Rossmann MG, Wengler G. "Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion." Nature. 1991; 354(6348): 37-43. PubMed: 1944569



Comments


Previous entry DP00066 has been split into polyprotein DP00066 and cleavage product DP00066_C001. Disorder is characterized on the cleavage product.



AV (6-29-2010) PubMed: 1944569


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