General information | DisProt: | DP00470 | Name: | Opaque 2 | Synonym(s): | Q39532_COILA
O2
| First appeared in release: | Release 3.0 (02/17/2006) | UniProt: | Q39532 | UniGene: | | SwissProt: | Q39532_COILA | TrEMBL: | | NCBI (GI): | 75281865 | Source organism: | Coix lachryma-jobi (Job's tears) | Sequence length: | 408 | Percent disordered: | 13% | Homologues: | |
Native sequence |
10 20 30 40 50 60 | | | | | | MEHVISMEEI LGPFWDLPPS PPPLPLPEQQ PLVTDTGSVV IDGVVTQGGG DGEGGDMMGQ - 60 NTTEWTFERL LEEEILINKT TLVTNSSCST LNIDPVVEVD QGTMASGAVS AVGDPMEYNA - 120 ILKRKLEVDL VAFKMWRASS VVNSERSQDS NNHNGGSKNV VQNKLNGEDP INNHAQNVDL - 180 RVRLATSSSS RDPSPSDEDM DGEVEILGFK MPTEERVRKR KESNRESARR SRYRKAAHLK - 240 ELEDQVEQLK AENSCLLRRL AALNQKYNEA NVDNRVLRAD METLRAKVKM GEDSLKRVME - 300 MSSLPPSMPI PALPSSSDAS VPIQDDIINY FSTTPAADED APVDNNSFII MPMADPLQLV - 360 QAEDQPTMGA MELIQKTMGA MPTSPGSALQ ESQLLGLGPD ETINMDMY
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Functional narrative |
Opaque-2 (O2) is a plant bZIP transcription factor that regulates the expression of storage proteins, called prolamines, in the endosperm of maize and Coix seeds. Homozygotic deletion of the O2 gene leads to a phenotypic change in maize seeds from hard glassy kernels to opaque
seeds and a decrease in the content of alpha and beta zeins in the endosperm. O2 also seems to be involved in the regulation of lysine catabolism and synthesis of growth precursors in seed. Similar to other plant bZIP transcription factors, O2 can form heterodimers with other bZIP
proteins and recognizes many sequences containing the ACGT box, therefore displaying a broad binding specificity and recognizing a variety of target sites in several distinct genes. O2 displays similarity with other bZIPs such as GCN4, c-Fos, and c-Jun.
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Map of ordered and disordered regions |
Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.
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Region 1 | Type: | Disordered | Name: | DNA-binding domain | Location: | 185 - 235 | Length: | 51 | Region sequence: |
ATSSSSRDPSPSDEDMDGEVEILGFKMPTEERVRKRKESNRESARRSRYRK | Modification type: | Fragment
Native
| PDB: | | Structural/functional type: | Function arises via a disorder to order transition | Functional classes: | | Functional subclasses: | Protein-DNA binding
| Detection methods:
- Size exclusion/gel filtration chromatography (pH: 7.4; 50 mM phosphate, 100 mM KCl; flow rate 0.7 mL/min; Superdex-200 column)
- Circular dichroism (CD) spectroscopy, far-UV (298 K; pH: 4; 2 nm bandwidth, 0.2 cm optical path cell; 50 mM phosphate buffer, 100 mM KCl)
- Nuclear magnetic resonance (NMR) (298 K; pH: 4; 15N-labeled samples; 50 mM phosphate, 100 mM KCl, 10% D2O)
| References:
- Moreau VH, da Silva AC, Siloto RM, Valente AP, Leite A, Almeida FC. "The bZIP region of the plant transcription factor opaque-2 forms stable homodimers in solution and retains its helical structure upon subunit dissociation." Biochemistry. 2004; 43(16): 4862-8. PubMed: 15096055
| Comments:In this paper the folding and association of the O2
bZIP region (O2bZIP) and the isolated leucine-zipper
region (O2Z) was studied.
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References |
- Lou X, Zhu J, Zhang Q, Zang R, Chen Y, Yu Z, Zhao Y. "Genetic control of the opaque-2 gene and background polygenes over some kernel traits in maize (Zea mays L.)." Genetica. 2005; 124(2-3): 291-300. PubMed: 16134340
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