DP00470: Opaque 2FASTA viewXML view

General information
DisProt:DP00470
Name:Opaque 2
Synonym(s):Q39532_COILA
O2
First appeared in release:Release 3.0 (02/17/2006)
UniProt:Q39532
UniGene: 
SwissProt: Q39532_COILA
TrEMBL:  
NCBI (GI): 75281865
Source organism:Coix lachryma-jobi (Job's tears)
Sequence length:408
Percent disordered:13%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
MEHVISMEEI LGPFWDLPPS PPPLPLPEQQ PLVTDTGSVV IDGVVTQGGG DGEGGDMMGQ - 60
NTTEWTFERL LEEEILINKT TLVTNSSCST LNIDPVVEVD QGTMASGAVS AVGDPMEYNA - 120
ILKRKLEVDL VAFKMWRASS VVNSERSQDS NNHNGGSKNV VQNKLNGEDP INNHAQNVDL - 180
RVRLATSSSS RDPSPSDEDM DGEVEILGFK MPTEERVRKR KESNRESARR SRYRKAAHLK - 240
ELEDQVEQLK AENSCLLRRL AALNQKYNEA NVDNRVLRAD METLRAKVKM GEDSLKRVME - 300
MSSLPPSMPI PALPSSSDAS VPIQDDIINY FSTTPAADED APVDNNSFII MPMADPLQLV - 360
QAEDQPTMGA MELIQKTMGA MPTSPGSALQ ESQLLGLGPD ETINMDMY



Functional narrative    

Opaque-2 (O2) is a plant bZIP transcription factor that regulates the expression of storage proteins, called prolamines, in the endosperm of maize and Coix seeds. Homozygotic deletion of the O2 gene leads to a phenotypic change in maize seeds from hard glassy kernels to opaque seeds and a decrease in the content of alpha and beta zeins in the endosperm. O2 also seems to be involved in the regulation of lysine catabolism and synthesis of growth precursors in seed. Similar to other plant bZIP transcription factors, O2 can form heterodimers with other bZIP proteins and recognizes many sequences containing the ACGT box, therefore displaying a broad binding specificity and recognizing a variety of target sites in several distinct genes. O2 displays similarity with other bZIPs such as GCN4, c-Fos, and c-Jun.

Region 1: 185-235

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name:DNA-binding domain
Location:185 - 235
Length:51
Region sequence:

ATSSSSRDPSPSDEDMDGEVEILGFKMPTEERVRKRKESNRESARRSRYRK

Modification type: Fragment
Native
PDB:  
Structural/functional type: Function arises via a disorder to order transition
Functional classes:  
Functional subclasses: Protein-DNA binding
Detection methods:
  1. Size exclusion/gel filtration chromatography (pH: 7.4; 50 mM phosphate, 100 mM KCl; flow rate 0.7 mL/min; Superdex-200 column)

  2. Circular dichroism (CD) spectroscopy, far-UV (298 K; pH: 4; 2 nm bandwidth, 0.2 cm optical path cell; 50 mM phosphate buffer, 100 mM KCl)

  3. Nuclear magnetic resonance (NMR) (298 K; pH: 4; 15N-labeled samples; 50 mM phosphate, 100 mM KCl, 10% D2O)

References:
  1. Moreau VH, da Silva AC, Siloto RM, Valente AP, Leite A, Almeida FC. "The bZIP region of the plant transcription factor opaque-2 forms stable homodimers in solution and retains its helical structure upon subunit dissociation." Biochemistry. 2004; 43(16): 4862-8. PubMed: 15096055

Comments:
In this paper the folding and association of the O2 bZIP region (O2bZIP) and the isolated leucine-zipper region (O2Z) was studied.




References

  1. Lou X, Zhu J, Zhang Q, Zang R, Chen Y, Yu Z, Zhao Y. "Genetic control of the opaque-2 gene and background polygenes over some kernel traits in maize (Zea mays L.)." Genetica. 2005; 124(2-3): 291-300. PubMed: 16134340


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