DP00536: Cold-regulated protein cor15aFASTA viewXML view

General information
DisProt:DP00536
Name:Cold-regulated protein cor15a
Synonym(s):Q42512_ARATH
Cor15a protein
At2g42540/F14N22.19
Cor15 protein
Cold-regulated protein 15a
COR15A
First appeared in release:Release 6.02 (05/24/2013)
UniProt:Q42512
UniGene:At.20845
SwissProt: Q42512_ARATH
TrEMBL:  
NCBI (GI): 75221310
Source organism:Arabidopsis thaliana (Mouse-ear cress)
Sequence length:139
Percent disordered:64%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
MAMSFSGAVL TGMASSFHSG AKQSSFGAVR VGQKTQFVVV SQRKKSLIYA AKGDGNILDD - 60
LNEATKKASD FVTDKTKEAL ADGEKAKDYV VEKNSETADT LGKEAEKAAA YVEEKGKEAA - 120
NKAAEFAEGK AGEAKDATK



Functional narrative    

COR15a is a cold-regulated gene of Arabidopsis thaliana that encodes a chloroplast-targeted polypeptide.

A putative signal peptide is found at aa M1-A50.

Region 1: 51-139

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name:mature COR15A
Location:51 - 139
Length:89
Region sequence:

AKGDGNILDDLNEATKKASDFVTDKTKEALADGEKAKDYVVEKNSETADTLGKEAEKAAA
YVEEKGKEAANKAAEFAEGKAGEAKDATK

Modification type: Native
PDB:  
Structural/functional type: Function arises via a disorder to order transition
Functional classes:  
Functional subclasses: Protein-lipid interaction
Protein-protein binding
Detection methods:
  1. Circular dichroism (CD) spectroscopy, far-UV (or dried rCor15a 2 mg/mL; rCor15a (in H2O) 0.75 mg/mL)

  2. SDS-PAGE gel, Aberrant mobility on

References:
  1. Thalhammer A, Hundertmark M, Popova AV, Seckler R, Hincha DK. "Interaction of two intrinsically disordered plant stress proteins (COR15A and COR15B) with lipid membranes in the dry state." Biochim. Biophys. Acta. 2010; 1798(9): 1812-20. PubMed: 20510170

Comments:
Thalhammer et al (2010) found that both COR15A and COR15B are fully unstructured in solution, but gain alpha-helical structure upon drying. To locate helices, the authors ran predictions which found alpha-helices predicted at about 58-81 and 97-137. Both helices appear to have amphipathic nature.

Experiments were performed on mature COR15A and mature COR15B without the signal peptides.




Comments


See also DP00743:COR15B


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