DP00675_C002: Capsid protein CFASTA viewXML view

General information
DisProt:DP00675_C002
Name:Capsid protein C
Synonym(s):POLG_BVDVN
cleavage product 2 of Genome polyprotein
First appeared in release:Release 5.1 (05/28/2010)
UniProt:P19711
UniGene: 
SwissProt: POLG_BVDVN
TrEMBL:  
NCBI (GI): 1346739
Source organism:Bovine viral diarrhea virus (BVDV)(Mucosal disease virus)
Sequence length:102
Percent disordered:100%
Homologues: 


Native sequence

        10         20         30         40         50         60
         |          |          |          |          |          |
SDTKEEGATK KKTQKPDRLE RGKMKIVPKE SEKDSKTKPP DATIVVEGVK YQVRKKGKTK - 60
SKNTQDGLYH NKNKPQESRK KLEKALLAWA IIAIVLFQVT MG



Functional narrative    

The viral RNA of pestiviruses is expressed as a single polyprotein which undergoes post-translational proteolytic processing resulting in the production of at least eleven individual proteins. The N-terminal protease cleaves itself from the nascent polyprotein autocatalytically and thereby generates the N-terminus of the adjacent viral capsid protein C. BVDV is divided in two types: cytopathic and non-cytopathic. Both types of viruses can be found in animals suffering from mucosal disease, as a cytopathic BVDV can develop from a non-cytopathic virus within the infected animal by deletions, mutations or insertions. Both types express uncleaved NS2-3, but cytopathic strains also express NS3. The cytopathic NADL strain contains an insertion (Jiv 90) that potentiate the partial cleavage of NS2-3. Removal of this insertion in the NADL Jiv 90- strain results in a non-cytopathic strain in which NS2-3 remains uncleaved. (UniProt) Capsid protein C is cleavage product 2 of Genome polyprotein, comprising aa 169-270 of the polyprotein.

Region 1: 1-102

Map of ordered and disordered regions







Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.


Region 1
Type:Disordered
Name: 
Location:1 - 102
Length:102
Region sequence:

SDTKEEGATKKKTQKPDRLERGKMKIVPKESEKDSKTKPPDATIVVEGVKYQVRKKGKTK
SKNTQDGLYHNKNKPQESRKKLEKALLAWAIIAIVLFQVTMG

Modification type: Native
PDB:  
Structural/functional type:  
Functional classes: Chaperones
Functional subclasses:  
Detection methods:
  1. Circular dichroism (CD) spectroscopy, far-UV (293 K; pH: 7.4; 2-mercaptoethanol 5 mM; path-length (quartz cuvette (Hellma)) 0.02 cm; protein (sample) 20 uM; sodium phosphate (buffer) 20 mM)

References:
  1. Ivanyi-Nagy R, Lavergne JP, Gabus C, Ficheux D, Darlix JL. "RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae." Nucleic Acids Res. 2008; 36(3): 712-725. PubMed: 18033802

Comments:
 


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