General information | DisProt: | DP00675_C002 | Name: | Capsid protein C | Synonym(s): | POLG_BVDVN
cleavage product 2 of Genome polyprotein
| First appeared in release: | Release 5.1 (05/28/2010) | UniProt: | P19711 | UniGene: | | SwissProt: | POLG_BVDVN | TrEMBL: | | NCBI (GI): | 1346739 | Source organism: | Bovine viral diarrhea virus (BVDV)(Mucosal disease virus) | Sequence length: | 102 | Percent disordered: | 100% | Homologues: | |
Native sequence |
10 20 30 40 50 60 | | | | | | SDTKEEGATK KKTQKPDRLE RGKMKIVPKE SEKDSKTKPP DATIVVEGVK YQVRKKGKTK - 60 SKNTQDGLYH NKNKPQESRK KLEKALLAWA IIAIVLFQVT MG
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Functional narrative |
The viral RNA of pestiviruses is expressed as a single polyprotein which undergoes post-translational proteolytic processing resulting in the production of at least eleven individual proteins. The N-terminal protease cleaves itself from the nascent polyprotein autocatalytically and thereby generates the N-terminus of the adjacent viral capsid protein C.
BVDV is divided in two types: cytopathic and non-cytopathic. Both types of viruses can be found in animals suffering from mucosal disease, as a cytopathic BVDV can develop from a non-cytopathic virus within the infected animal by deletions, mutations or insertions. Both types express uncleaved NS2-3, but cytopathic strains also express NS3. The cytopathic NADL strain contains an insertion (Jiv 90) that potentiate the partial cleavage of NS2-3. Removal of this insertion in the NADL Jiv 90- strain results in a non-cytopathic strain in which NS2-3 remains uncleaved. (UniProt) Capsid protein C is cleavage product 2 of Genome polyprotein, comprising aa 169-270 of the polyprotein.
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Map of ordered and disordered regions |
Note: 'Mouse' over a region to see the start and stop residues. Click on a region to see detailed information.
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Region 1 | Type: | Disordered | Name: | | Location: | 1 - 102 | Length: | 102 | Region sequence: |
SDTKEEGATKKKTQKPDRLERGKMKIVPKESEKDSKTKPPDATIVVEGVKYQVRKKGKTK SKNTQDGLYHNKNKPQESRKKLEKALLAWAIIAIVLFQVTMG | Modification type: | Native
| PDB: | | Structural/functional type: | | Functional classes: | Chaperones
| Functional subclasses: | | Detection methods:
- Circular dichroism (CD) spectroscopy, far-UV (293 K; pH: 7.4; 2-mercaptoethanol 5 mM; path-length (quartz cuvette (Hellma)) 0.02 cm; protein (sample) 20 uM; sodium phosphate (buffer) 20 mM)
| References:
- Ivanyi-Nagy R, Lavergne JP, Gabus C, Ficheux D, Darlix JL. "RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae." Nucleic Acids Res. 2008; 36(3): 712-725. PubMed: 18033802
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