This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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Aaron BM, Oikawa K, Reithmeier RA, Sykes BD. "Characterization of skeletal muscle calsequestrin by 1H NMR spectroscopy." J Biol Chem. 1984; 259(19): 11876-81. PMID: 6480588
Ababou A, Ladbury JE. "Survey of the year 2004: literature on applications of isothermal titration calorimetry." J Mol Recognit. 2006; 19(1): 79-89. PMID: 16220545
Abad-Zapatero C, Abdel-Meguid SS, Johnson JE, Leslie AG, Rayment I, Rossmann MG, Suck D, Tsukihara T. "Structure of southern bean mosaid virus at 2.8 A resolution." Nature. 1980; 286(5768): 33-9. PMID: 19711553
Abajian C, Rosenzweig AC. "Crystal structure of yeast Sco1." J Biol Inorg Chem. 2006; 11(4): 459-66. PMID: 16570183
Abajian C, Yatsunyk LA, Ramirez BE, Rosenzweig AC. "Yeast cox17 solution structure and Copper(I) binding." J Biol Chem. 2004; 279(51): 53584-92. PMID: 15465825
Abdi KM, Mohler PJ, Davis JQ, Bennett V. "Isoform specificity of ankyrin-B: A site in the divergent C-terminal domain is required for intramolecular association." J Biol Chem. 2006; 281(9): 5741-9. PMID: 16368689
Abedini A, Raleigh DP. "Destabilization of human IAPP amyloid fibrils by proline mutations outside of the putative amyloidogenic domain: is there a critical amyloidogenic domain in human IAPP?" J Mol Biol. 2006; 355(2): 274-81. PMID: 16303136
Abendroth J, Rice AE, McLuskey K, Bagdasarian M, Hol WG. "The crystal structure of the periplasmic domain of the type II secretion system protein EpsM from Vibrio cholerae: the simplest version of the ferredoxin fold." J. Mol. Biol.. 2004; 338(3): 585-96. PMID: 15081815
Abercrombie BD, Kneale GG, Crane-Robinson C, Bradbury EM, Goodwin GH, Walker JM, Johns EW. "Studies on the conformational properties of the high-mobility-group chromosomal protein HMG 17 and its interaction with DNA." Eur J Biochem. 1978; 84(1): 173-7. PMID: 565710
Abergel C, Rudinger-Thirion J, Giegé R, Claverie JM. "Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS." J. Virol.. 2007; 81(22): 12406-17. PMID: 17855524
Abian O, Neira JL, Velazquez-Campoy A. "Thermodynamics of zinc binding to hepatitis C virus NS3 protease: a folding by binding event." Proteins. 2009; 77(3): 624-36. PMID: 19536779
Abramczyk D, Tchorzewski M, Krokowski D, Boguszewska A, Grankowski N. "Overexpression, purification and characterization of the acidic ribosomal P-proteins from Candida albicans." Biochim Biophys Acta. 2004; 1672(3): 214-23. PMID: 15182941
Abramson J, Riistama S, Larsson G, Jasaitis A, Svensson-Ek M, Laakkonen L, Puustinen A, Iwata S, Wikstrom M. "The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site." Nat Struct Biol. 2000; 7(10): 910-7. PMID: 11017202
Absmanner B, Schmeiser V, Kampf M, Lehle L. "Biochemical characterization, membrane association and identification of amino acids essential for function of Alg11 from Saccharomyces cerevisiae, an alpha1,2-mannosyltransferase, catalyzing two sequential glycosylation steps in the formation of the lipid-linked core oligosaccharide." Biochem J. 2010; 426(2): 205-17. PMID: 19929855
AbuKhader M, Heap J, De Matteis C, Kellam B, Doughty SW, Minton N, Paoli M. "Binding of the anticancer prodrug CB1954 to the activating enzyme NQO2 revealed by the crystal structure of their complex." J. Med. Chem.. 2005; 48(24): 7714-9. PMID: 16302811
Acevedo ML, Arbildúa JJ, Monasterio O, Toledo H, León O. "Role of the 207-218 peptide region of Moloney murine leukemia virus integrase in enzyme catalysis." Arch Biochem Biophys. 2009. PMID: 20026028
Acharya R, Fry E, Stuart D, Fox G, Rowlands D, Brown F. "The three-dimensional structure of foot-and-mouth disease virus at 2.9 A resolution." Nature. 1989; 337(6209): 709-16. PMID: 2537470
Adams VH, McBryant SJ, Wade PA, Woodcock CL, Hansen JC. "Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2." J Biol Chem. 2007; 282(20): 15057-64. PMID: 17371874
Addlagatta A, Krzywda S, Czapinska H, Otlewski J, Jaskolski M. "Ultrahigh-resolution structure of a BPTI mutant." Acta Crystallogr. D Biol. Crystallogr.. 2001; 57(Pt 5): 649-63. PMID: 11320305
Adekambi T, Berger P, Raoult D, Drancourt M. "rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov." Int J Syst Evol Microbiol. 2006; 56(Pt 1): 133-43. PMID: 16403878
Adikesavan Nallini Vijayarangan, Mahmood Syed Saad, Stanley Nithianantham, Xu Zhen, Wu Nan, Thibonnier Marc, Shoham Menachem. "A C-terminal segment of the V1R vasopressin receptor is unstructured in the crystal structure of its chimera with the maltose-binding protein." Acta Crystallographica Section F. 2005; 61(4): 341-345.
Adinolfi S, Bagni C, Musco G, Gibson T, Mazzarella L, Pastore A. "Dissecting FMR1, the protein responsible for fragile X syndrome, in its structural and functional domains." RNA. 1999; 5(9): 1248-58. PMID: 10496225
Adkins JN, Lumb KJ. "Intrinsic structural disorder and sequence features of the cell cycle inhibitor p57Kip2." Proteins. 2002; 46(1): 1-7. PMID: 11746698
Adkins NL, McBryant SJ, Johnson CN, Leidy JM, Woodcock CL, Robert CH, Hansen JC, Georgel PT. "Role of nucleic acid binding in Sir3p-dependent interactions with chromatin fibers." Biochemistry. 2009; 48(2): 276-88. PMID: 19099415
Adman ET, Le Trong I, Stenkamp RE, Nieslanik BS, Dietze EC, Tai G, Ibarra C, Atkins WM. "Localization of the C-terminus of rat glutathione S-transferase A1-1: crystal structure of mutants W21F and W21F/F220Y." Proteins. 2001; 42(2): 192-200. PMID: 11119643
AEvarsson A, Brazhnikov E, Garber M, Zheltonosova J, Chirgadze Y, al-Karadaghi S, Svensson LA, Liljas A. "Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus." EMBO J. 1994; 13(16): 3669-77. PMID: 8070397
Agalarov SC, Sridhar Prasad G, Funke PM, Stout CD, Williamson JR. "Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain." Science. 2000; 288(5463): 107-13. PMID: 10753109
Agarkova I, Auerbach D, Ehler E, Perriard JC. "A novel marker for vertebrate embryonic heart, the EH-myomesin isoform." J Biol Chem. 2000; 275(14): 10256-64. PMID: 10744711
Agarkova I, Perriard JC. "The M-band: an elastic web that crosslinks thick filaments in the center of the sarcomere." Trends Cell Biol. 2005; 15(9): 477-85. PMID: 16061384
Agarwal R, Binz T, Swaminathan S. "Analysis of active site residues of botulinum neurotoxin E by mutational, functional, and structural studies: Glu335Gln is an apoenzyme." Biochemistry. 2005; 44(23): 8291-302. PMID: 15938619
Agarwal R, Eswaramoorthy S, Kumaran D, Binz T, Swaminathan S. "Structural analysis of botulinum neurotoxin type E catalytic domain and its mutant Glu212-->Gln reveals the pivotal role of the Glu212 carboxylate in the catalytic pathway." Biochemistry. 2004; 43(21): 6637-44. PMID: 15157097
Agianian B, Leonard K, Bonte E, Van der Zandt H, Becker PB, Tucker PA. "The glutamine-rich domain of the Drosophila GAGA factor is necessary for amyloid fibre formation in vitro, but not for chromatin remodelling." J Mol Biol. 1999; 285(2): 527-44. PMID: 9878427
Aguado-Llera D, Goormaghtigh E, de Geest N, Quan XJ, Prieto A, Hassan BA, Gomez J, Neira JL. "The basic helix-loop-helix region of human neurogenin 1 is a monomeric natively unfolded protein which forms a "fuzzy" complex upon DNA binding." Biochemistry. . PMID: 20102160
Ahmad B, Ansari MA, Sen P, Khan RH. "Low versus high molecular weight poly(ethylene glycol)-induced states of stem bromelain at low pH: stabilization of molten globule and unfolded states." Biopolymers. 2006; 81(5): 350-9. PMID: 16345002
Ahmed FR, Rose DR, Evans SV, Pippy ME, To R. "Refinement of recombinant oncomodulin at 1.30 A resolution." J. Mol. Biol.. 1993; 230(4): 1216-24. PMID: 8487302
Ahn VE, Faull KF, Whitelegge JP, Fluharty AL, Privé GG. "Crystal structure of saposin B reveals a dimeric shell for lipid binding." Proc. Natl. Acad. Sci. U.S.A.. 2002; 100(1): 38-43. PMID: 12518053
Ahn VE, Leyko P, Alattia JR, Chen L, Privé GG. "Crystal structures of saposins A and C." Protein Sci.. 2006; 15(8): 1849-57. PMID: 16823039
Ahuja HG, Felix CA, Aplan PD. "The t(11;20)(p15;q11) chromosomal translocation associated with therapy-related myelodysplastic syndrome results in an NUP98-TOP1 fusion." Blood. 1999; 94(9): 3258-3261. PMID: 10556215
Ai S, Lu G, He Q, Li J. "Highly flexible polyelectrolyte nanotubes." J Am Chem Soc. 2003; 125(37): 11140-1. PMID: 16220903
Aivazian D, Stern LJ. "Phosphorylation of T cell receptor zeta is regulated by a lipid dependent folding transition." Nat Struct Biol. 2000; 7(11): 1023-6. PMID: 11062556
Aizawa SI, Vonderviszt F, Ishima R, Akasaka K. "Termini of Salmonella flagellin are disordered and become organized upon polymerization into flagellar filament." J Mol Biol. 1990; 211(4): 673-7. PMID: 2313691
Ajiro K, Nishimoto T. "Specific site of histone H3 phosphorylation related to the maintenance of premature chromosome condensation. Evidence for catalytically induced interchange of the subunits." J Biol Chem. 1985; 260(29): 15379-15381. PMID: 4066674
Akasaka K, Gyimesi-Forras K, Lammerhofer M, Fujita T, Watanabe M, Harada N, Lindner W. "Investigations of molecular recognition aspects related to the enantiomer separation of 2-methoxy-2-(1-naphthyl)propionic acid using quinine carbamate as chiral selector: An NMR and FT-IR spectroscopic as well as X-ray crystallographic study." Chirality. 2005; 17(9): 544-55. PMID: 16189833
Akita M, Suzuki A, Kobayashi T, Ito S, Yamane T. "The first structure of pectate lyase belonging to polysaccharide lyase family 3." Acta Crystallogr. D Biol. Crystallogr.. 2001; 57(Pt 12): 1786-92. PMID: 11717490
Al-Ali H, Rieger ME, Seldeen KL, Harris TK, Farooq A, Briegel KJ. "Biophysical characterization reveals structural disorder in the developmental transcriptional regulator LBH." Biochem Biophys Res Commun. 2010; 391(1): 1104-9. PMID: 20005203
Albrecht M, Golatta M, Wüllner U, Lengauer T. "Structural and functional analysis of ataxin-2 and ataxin-3." Eur J Biochem. 2004; 271(15): 3155-70. PMID: 15265035
Albrecht M, Hoffmann D, Evert BO, Schmitt I, Wullner U, Lengauer T. "Structural modeling of ataxin-3 reveals distant homology to adaptins." Proteins. 2003; 50(2): 355-70. PMID: 12486728
Albright RA, Matthews BW. "Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution." J. Mol. Biol.. 1998; 280(1): 137-51. PMID: 9653037
Alcaraz LA, del Alamo M, Barrera FN, Mateu MG, Neira JL. "Flexibility in HIV-1 assembly subunits: solution structure of the monomeric C-terminal domain of the capsid protein." Biophys. J.. 2007; 93(4): 1264-76. PMID: 11533199
Alcaraz LA, Del Alamo M, Mateu MG, Neira JL. "Structural mobility of the monomeric C-terminal domain of the HIV-1 capsid protein." FEBS J.. 2008; 275(13): 3299-311. PMID: 18489586
Alexandrescu AT, Abeygunawardana C, Shortle D. "Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease: a heteronuclear NMR study." Biochemistry. 1994; 33(5): 1063-72. PMID: 8110737
Alexandrescu AT, Gittis AG, Abeygunawardana C, Shortle D. "NMR structure of a stable "OB-fold" sub-domain isolated from staphylococcal nuclease." J Mol Biol. 1995; 250(2): 134-43. PMID: 7608966
Alfano C, Sanfelice D, Babon J, Kelly G, Jacks A, Curry S, Conte MR. "Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein." Nat Struct Mol Biol. 2004; 11(4): 323-9. PMID: 15004549
Alisaraie L, Haller LA, Fels G. "A QXP-Based Multistep Docking Procedure for Accurate Prediction of Protein-Ligand Complexes." J Chem Inf Model. 2006; 46(3): 1174-87. PMID: 16711737
Ali T, Coles P, Stevens TJ, Stott K, Thomas JO. "Two homologous domains of similar structure but different stability in the yeast linker histone, Hho1p." J Mol Biol. 2004; 338(1): 139-48. PMID: 15050829
Ali T, Thomas JO. "Distinct properties of the two putative "globular domains" of the yeast linker histone, Hho1p." J Mol Biol. 2004; 337(5): 1123-35. PMID: 15046982
Allain FH, Yen YM, Masse JE, Schultze P, Dieckmann T, Johnson RC, Feigon J. "Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding." EMBO J. 1999; 18(9): 2563-79. PMID: 10228169
Allison JR, Varnai P, Dobson CM, Vendruscolo M. "Determination of the free energy landscape of alpha-synuclein using spin label nuclear magnetic resonance measurements." J Am Chem Soc. 2009; 131(51): 18314-26. PMID: 20028147
Almog R, Maley F, Maley GF, Maccoll R, Van Roey P. "Three-dimensional structure of the R115E mutant of T4-bacteriophage 2'-deoxycytidylate deaminase." Biochemistry. 2004; 43(43): 13715-23. PMID: 15504034
Almond A, Deangelis PL, Blundell CD. "Hyaluronan: the local solution conformation determined by NMR and computer modeling is close to a contracted left-handed 4-fold helix." J Mol Biol. 2006; 358(5): 1256-69. PMID: 16584748
Alonso LG, Garcia-Alai MM, Nadra AD, Lapena AN, Almeida FL, Gualfetti P, Prat-Gay GD. "High-risk (HPV16) human papillomavirus E7 oncoprotein is highly stable and extended, with conformational transitions that could explain its multiple cellular binding partners." Biochemistry. 2002; 41(33): 10510-8. PMID: 12173938
Alsheikh MK, Heyen BJ, Randall SK. "Ion binding properties of the dehydrin ERD14 are dependent upon phosphorylation." J Biol Chem. 2003; 278(42): 40882-9. PMID: 12917402
Altschuler GM, Klug DR, Willison KR. "Unfolding energetics of G-alpha-actin: a discrete intermediate can be re-folded to the native state by CCT." J Mol Biol. 2005; 353(2): 385-96. PMID: 16171816
Alvarez C, Lorenzo V, Riande E. "Relaxation response of polymers containing highly flexible side groups monitored by broadband dielectric spectroscopy." J Chem Phys. 2005; 122(19): 194905. PMID: 16161615
Alves VS, Castilho BA. "Gir2 is an intrinsically unstructured protein that is present in Saccharomyces cerevisiae as a group of heterogeneously electrophoretic migrating forms." Biochem Biophys Res Commun. 2005; 332(2): 450-5. PMID: 15896712
Alves VS, Pimenta DC, Sattlegger E, Castilho BA. "Biophysical characterization of Gir2, a highly acidic protein of Saccharomyces cerevisiae with anomalous electrophoretic behavior." Biochem Biophys Res Commun. 2004; 314(1): 229-34. PMID: 14715270
Amos FF, Evans JS. "AP7, a partially disordered pseudo C-RING protein, is capable of forming stabilized aragonite in vitro." Biochemistry. 2009; 48(6): 1332-9. PMID: 19159266
Anbanandam A, Bieber Urbauer RJ, Bartlett RK, Smallwood HS, Squier TC, Urbauer JL. "Mediating molecular recognition by methionine oxidation: conformational switching by oxidation of methionine in the carboxyl-terminal domain of calmodulin." Biochemistry. 2005; 44(27): 9486-96. PMID: 15996103
Anderluh G, Gokce I, Lakey JH. "A natively unfolded toxin domain uses its receptor as a folding template." J Biol Chem. 2004; 279(21): 22002-9. PMID: 15004032
Anderluh G, Hong Q, Boetzel R, MacDonald C, Moore GR, Virden R, Lakey JH. "Concerted folding and binding of a flexible colicin domain to its periplasmic receptor TolA." J Biol Chem. 2003; 278(24): 21860-8. PMID: 12679333
Andersen G, Poterszman A, Egly JM, Moras D, Thierry JC. "The crystal structure of human cyclin H." FEBS Lett. 1996; 397(1): 65-9. PMID: 8941715
Andersen JM, Al-Khairy D, Ingalls RR. "Innate Immunity at the Mucosal Surface: Role of Toll-like Receptor 3 and Toll-like Receptor 9 in Cervical Epithelial Cell Responses to Microbial Pathogens." Biol Reprod. 2006. PMID: 16421230
Anderson EM, Halsey WA, Wuttke DS. "Delineation of the high-affinity single-stranded telomeric DNA-binding domain of Saccharomyces cerevisiae Cdc13." Nucleic Acids Res. 2002; 30(19): 4305-13. PMID: 12364610
Anderson OD, Greene FC, Yip RE, Halford NG, Shewry PR, Malpica-Romero JM. "Nucleotide sequences of the two high-molecular-weight glutenin genes from the D-genome of a hexaploid bread wheat, Triticum aestivum L. cv Cheyenne." Nucleic Acids Res. 1989; 17(1): 461-2. PMID: 2563152
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Andreotti AH. "Native state proline isomerization: an intrinsic molecular switch." Biochemistry. 2003; 42(32): 9515-24. PMID: 12911293
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Angelucci F, Sayed AA, Williams DL, Boumis G, Brunori M, Dimastrogiovanni D, Miele AE, Pauly F, Bellelli A. "Inhibition of Schistosoma mansoni thioredoxin-glutathione reductase by auranofin: structural and kinetic aspects." J Biol Chem. 2009; 284(42): 28977-85. PMID: 19710012
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Arjunan P, Nemeria N, Brunskill A, Chandrasekhar K, Sax M, Yan Y, Jordan F, Guest JR, Furey W. "Structure of the pyruvate dehydrogenase multienzyme complex E1 component from Escherichia coli at 1.85 A resolution." Biochemistry. 2002; 41(16): 5213-21. PMID: 11955070
Armache KJ, Garlick JD, Canzio D, Narlikar GJ, Kingston RE. "Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution." Science. 2011; 334(6058): 977-82. PMID: 22096199
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Arold S, Franken P, Strub MP, Hoh F, Benichou S, Benarous R, Dumas C. "The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling." Structure. 1997; 5(10): 1361-72. PMID: 9351809
Arold ST, Baur AS. "Dynamic Nef and Nef dynamics: how structure could explain the complex activities of this small HIV protein." Trends Biochem Sci. 2001; 26(6): 356-63. PMID: 11406408
Asakura T, Hamada M, Ha SW, Knight DP. "Conformational Study of Silklike Peptides Modified by the Addition of the Calcium-Binding Sequence from the Shell Nacreous Matrix Protein MSI60 Using (13)C CP/MAS NMR Spectroscopy." Biomacromolecules. 2006; 7(6): 1996-2002. PMID: 16768425
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Augustin MA, Reichert AS, Betat H, Huber R, Morl M, Steegborn C. "Crystal structure of the human CCA-adding enzyme: insights into template-independent polymerization." J Mol Biol. 2003; 328(5): 985-94. PMID: 12729736
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Ausili A, Scire A, Damiani E, Zolese G, Bertoli E, Tanfani F. "Temperature-induced molten globule-like state in human alpha1-acid glycoprotein: an infrared spectroscopic study." Biochemistry. 2005; 44(49): 15997-6006. PMID: 16331959
Aviv T, Lin Z, Ben-Ari G, Smibert CA, Sicheri F. "Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p." Nat Struct Mol Biol. 2006. PMID: 16429151
Axe DD. "Estimating the prevalence of protein sequences adopting functional enzyme folds." J Mol Biol. 2004; 341(5): 1295-315. PMID: 15321723
Ayuso-Tejedor S, Angarica VE, Bueno M, Campos LA, Abián O, Bernadó P, Sancho J, Jiménez MA. "Design and structure of an equilibrium protein folding intermediate: a hint into dynamical regions of proteins." J. Mol. Biol.. 2010; 400(4): 922-34. PMID: 20553732
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