Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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O

Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH. "Shape-specific recognition in the structure of the Vts1p SAM domain with RNA." Nat Struct Mol Biol. 2006. PMID: 16429156
 
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. "Predicting intrinsic disorder from amino acid sequence." Proteins. 2003; 53 Suppl 6: 566-72. PMID: 14579347 zoran@ist.temple.edu
 
O'Connor L, Strasser A, O'Reilly LA, Hausmann G, Adams JM, Cory S, Huang DC. "Bim: a novel member of the Bcl-2 family that promotes apoptosis." Embo J. 1998; 17(2): 384-95. PMID: 9430630
 
Oda H, Uemura T, Harada Y, Iwai Y, Takeichi M. "A Drosophila homolog of cadherin associated with armadillo and essential for embryonic cell-cell adhesion." Dev Biol. 1994; 165(2): 716-26. PMID: 7958432
 
O'Hare P, Williams G. "Structural studies of the acidic transactivation domain of the Vmw65 protein of herpes simplex virus using 1H NMR." Biochemistry. 1992; 31(16): 4150-6. PMID: 1314658
 
Ohashi T, Hale CA, de Boer PA, Erickson HP. "Structural evidence that the P/Q domain of ZipA is an unstructured, flexible tether between the membrane and the C-terminal FtsZ-binding domain." J Bacteriol. 2002; 184(15): 4313-4315. PMID: 12107152 h.erickson@cellbio.duke.edu
 
Ohe Y, Iwai K. "Human spleen histone H3. Isolation and amino acid sequence." J Biochem (Tokyo). 1981; 90(4): 1205-1211. PMID: 7309716
 
Oh JS, Manzerra P, Kennedy MB. "Regulation of the neuron-specific Ras GTPase-activating protein, synGAP, by Ca2+/calmodulin-dependent protein kinase II." J Biol Chem. 2004; 279(17): 17980-8. PMID: 14970204
 
Ohlendorf DH, Tronrud DE, Matthews BW. "Refined structure of Cro repressor protein from bacteriophage lambda suggests both flexibility and plasticity." J. Mol. Biol.. 1998; 280(1): 129-36. PMID: 9653036
 
Oh M, Mirkin CA. "Chemically tailorable colloidal particles from infinite coordination polymers." Nature. 2005; 438(7068): 651-4. PMID: 16319888
 
Ohnishi M, Reithmeier RA. "Fragmentation of rabbit skeletal muscle calsequestrin: spectral and ion binding properties of the carboxyl-terminal region." Biochemistry. 1987; 26(23): 7458-65. PMID: 3427087
 
Ohta M, Watanabe A, Mikami T, Nakajima Y, Kitami M, Tabunoki H, Ueda K, Sato R. "Mechanism by which Bombyx mori hemocytes recognize microorganisms: direct and indirect recognition systems for PAMPs." Dev Comp Immunol. 2006. PMID: 16434097
 
Oka S, Shiraishi Y, Yoshida T, Ohkubo T, Sugiura Y, Kobayashi Y. "NMR structure of transcription factor Sp1 DNA binding domain." Biochemistry. 2004; 43(51): 16027-35. PMID: 15609997
 
Okayama H, Berg P. "A cDNA cloning vector that permits expression of cDNA inserts in mammalian cells." Mol Cell Biol. 1983; 3(2): 280-9. PMID: 6300662
 
Okon M, Frank PG, Marcel YL, Cushley RJ. "Heteronuclear NMR studies of human serum apolipoprotein A-I. Part I. Secondary structure in lipid-mimetic solution." FEBS Lett. 2002; 517(1-3): 139-43. PMID: 12062424
 
Okuda M, Tanaka A, Hanaoka F, Ohkuma Y, Nishimura Y. "Structural insights into the asymmetric effects of zinc-ligand cysteine mutations in the novel zinc ribbon domain of human TFIIEalpha for transcription." J Biochem (Tokyo). 2005; 138(4): 443-9. PMID: 16272138
 
Oldfield CJ, Cheng Y, Cortese MS, Brown CJ, Uversky VN, Dunker AK. "Comparing and combining predictors of mostly disordered proteins." Biochemistry. 2005; 44(6): 1989-2000. PMID: 15697224 kedunker@iupui.edu
 
Oldfield CJ, Cheng Y, Cortese MS, Romero P, Uversky VN, Dunker AK. "Coupled folding and binding with alpha-helix-forming molecular recognition elements." Biochemistry. 2005; 44(37): 12454-70. PMID: 16156658 kedunker@iupui.edu
 
Oldfield CJ, Ulrich EL, Cheng Y, Dunker AK, Markley JL. "Addressing the intrinsic disorder bottleneck in structural proteomics." Proteins. 2005; 59(3): 444-53. PMID: 15789434
 
O'Leary JM, Hamilton JM, Deane CM, Valeyev NV, Sandell LJ, Downing AK. "Solution structure and dynamics of a prototypical chordin-like cysteine-rich repeat (von Willebrand Factor type C module) from collagen IIA." J Biol Chem. 2004; 279(51): 53857-66. PMID: 15466413
 
Oleksi A, Blanco AG, Boer R, Uson I, Aymami J, Rodger A, Hannon MJ, Coll M. "Molecular recognition of a three-way DNA junction by a metallosupramolecular helicate." Angew Chem Int Ed Engl. 2006; 45(8): 1227-31. PMID: 16463312
 
Oleksy A, Blanco AG, Boer R, Uson I, Aymami J, Rodger A, Hannon MJ, Coll M. "Molecular Recognition of a Three-Way DNA Junction by a Metallosupramolecular Helicate." Angew Chem Int Ed Engl. 2006; 45(12): 1834. PMID: 16521103
 
Olieric V, Wolff P, Takeuchi A, Bec G, Birck C, Vitorino M, Kieffer B, Beniaminov A, Cavigiolio G, Theil E, Allmang C, Krol A, Dumas P. "SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein." Biochimie. 2009; 91(8): 1003-9. PMID: 19467292
 
Oliéric V, Wolff P, Takeuchi A, Bec G, Birck C, Vitorino M, Kieffer B, Beniaminov A, Cavigiolio G, Theil E, Allmang C, Krol A, Dumas P. "SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein." Biochimie. 2009; 91(8): 1003-9. PMID: 19467292
 
Olinares PD, Ponnala L, van Wijk KJ. "Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering." Mol. Cell Proteomics. 2010; 9(7): 1594-615. PMID: 20423899
 
Olson AJ, Bricogne G, Harrison SC. "Structure of tomato busy stunt virus IV. The virus particle at 2.9 A resolution." J Mol Biol. 1983; 171(1): 61-93. PMID: 6644820
 
Olson KE, Narayanaswami P, Vise PD, Lowry DF, Wold MS, Daughdrill GW. "Secondary structure and dynamics of an intrinsically unstructured linker domain." J Biomol Struct Dyn. 2005; 23(2): 113-24. PMID: 16060685
 
Omi R, Kurokawa S, Mihara H, Hayashi H, Goto M, Miyahara I, Kurihara T, Hirotsu K, Esaki N. "Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase." J Biol Chem. 2010; 285(16): 12133-12139. PMID: 20164179
 
O'Neal CJ, Amaya EI, Jobling MG, Holmes RK, Hol WG. "Crystal structures of an intrinsically active cholera toxin mutant yield insight into the toxin activation mechanism." Biochemistry. 2004; 43(13): 3772-82. PMID: 15049684
 
Ono K, Kusano O, Shimotakahara S, Shimizu M, Yamazaki T, Shindo H. "The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy." Nucleic Acids Res. 2003; 31(24): 7199-207. PMID: 14654695
 
Onyuksel H, Sejourne F, Suzuki H, Rubinstein I. "Human VIP-alpha: A long-acting, biocompatible and biodegradable peptide nanomedicine for essential hypertension." Peptides. 2006. PMID: 16621151
 
Oobatake M, Yamasaki T, Simmer JP, Renugopalakrishnan V. "Thermal denaturation of a recombinant mouse amelogenin: circular dichroism and differential scanning calorimetric studies." Proteins. 2006; 62(2): 461-9. PMID: 16284958
 
Oomen CJ, Hoogerhout P, Kuipers B, Vidarsson G, van Alphen L, Gros P. "Crystal structure of an Anti-meningococcal subtype P1.4 PorA antibody provides basis for peptide-vaccine design." J Mol Biol. 2005; 351(5): 1070-80. PMID: 16038932
 
Orlowski M, Szyszka M, Kowalska A, Grad I, Zoglowek A, Rymarczyk G, Dobryszycki P, Krowarsch D, Rastinejad F, Kochman M, Ozyhar A. "Plasticity of the ecdysone receptor DNA binding domain." Mol Endocrinol. 2004; 18(9): 2166-84. PMID: 15192079
 
Orosz F, Kovacs GG, Lehotzky A, Olah J, Vincze O, Ovadi J. "TPPP/p25: from unfolded protein to misfolding disease: prediction and experiments." Biol Cell. 2004; 96(9): 701-11. PMID: 15567525
 
Osawa M, Dace A, Tong KI, Valiveti A, Ikura M, Ames JB. "Mg2+ and Ca2+ differentially regulate DNA binding and dimerization of DREAM." J Biol Chem. 2005; 280(18): 18008-14. PMID: 15746104
 
Osborne LR, Soder S, Shi XM, Pober B, Costa T, Scherer SW, Tsui LC. "Hemizygous deletion of the syntaxin 1A gene in individuals with Williams syndrome." Am J Hum Genet. 1997; 61(2): 449-452. PMID: 9311751
 
Osborne MJ, Su Z, Sridaran V, Ni F. "Efficient expression of isotopically labeled peptides for high resolution NMR studies: application to the Cdc42/Rac binding domains of virulent kinases in Candida albicans." J Biomol NMR. 2003; 26(4): 317-26. PMID: 12815258
 
Ostedgaard LS, Baldursson O, Vermeer DW, Welsh MJ, Robertson AD. "A functional R domain from cystic fibrosis transmembrane conductance regulator is predominantly unstructured in solution." Proc Natl Acad Sci U S A. 2000; 97(10): 5657-62. PMID: 10792060
 
Ostedgaard LS, Baldursson O, Welsh MJ. "Regulation of the cystic fibrosis transmembrane conductance regulator Cl- channel by its R domain." J Biol Chem. 2001; 276(11): 7689-92. PMID: 11244086
 
Ostrowski J, Barber MJ, Rueger DC, Miller BE, Siegel LM, Kredich NM. "Characterization of the flavoprotein moieties of NADPH-sulfite reductase from Salmonella typhimurium and Escherichia coli. Physicochemical and catalytic properties, amino acid sequence deduced from DNA sequence of cysJ, and comparison with NADPH-cytochrome P-450 reductase." J Biol Chem. 1989; 264(27): 15796-808. PMID: 2550423
 
Ostwald TJ, MacLennan DH, Dorrington KJ. "Effects of cation binding on the conformation of calsequestrin and the high affinity calcium-binding protein of sarcoplasmic reticulum." J Biol Chem. 1974; 249(18): 5867-71. PMID: 4472093
 
Otera H, Setoguchi K, Hamasaki M, Kumashiro T, Shimizu N, Fujiki Y. "Peroxisomal targeting signal receptor Pex5p interacts with cargoes and import machinery components in a spatiotemporally differentiated manner: conserved Pex5p WXXXF/Y motifs are critical for matrix protein import." Mol Cell Biol. 2002; 22(6): 1639-55. PMID: 11865044
 
Otero R, Rosei F, Besenbacher F. "Scanning Tunneling Microscopy Manipulation of Complex Organic Molecules on Solid Surfaces." Annu Rev Phys Chem. 2006; 57: 497-525. PMID: 16599819
 
Otten R, Wood K, Mulder FA. "Comprehensive determination of (3)J (HNHalpha) for unfolded proteins using (13)C'-resolved spin-echo difference spectroscopy." J Biomol NMR. 2009. PMID: 19898942
 
Otto S. "Reinforced molecular recognition as an alternative to rigid receptors." Dalton Trans. 2006: 2861-4. PMID: 16751894
 
Otyepka M, Bartova I, Kri Z, Koca J. "Different mechanisms of CDK5 and CDK2 activation as revealed by CDK5/p25 and CDK2/Cyclin A dynamics." J Biol Chem. 2006. PMID: 16407256
 
Oubridge C, Kuglstatter A, Jovine L, Nagai K. "Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle." Mol Cell. 2002; 9(6): 1251-61. PMID: 12086622
 
Ovchinnikov Yu A, Lipkin VM, Kumarev VP, Gubanov VV, Khramtsov NV, Akhmedov NB, Zagranichny VE, Muradov KG. "Cyclic GMP phosphodiesterase from cattle retina. Amino acid sequence of the gamma-subunit and nucleotide sequence of the corresponding cDNA." FEBS Lett. 1986; 204(2): 288-92. PMID: 3015681
 
Owen DJ, Wigge P, Vallis Y, Moore JD, Evans PR, McMahon HT. "Crystal structure of the amphiphysin-2 SH3 domain and its role in the prevention of dynamin ring formation." Embo J. 1998; 17(18): 5273-85. PMID: 9736607
 
Ozgenc A, Loeb LA. "Current advances in unraveling the function of the Werner syndrome protein." Mutat Res. 2005; 577((1-2)): 237-51. PMID: 15946710
 
Oz G, Zangger K, Armitage IM. "Three-dimensional structure and dynamics of a brain specific growth inhibitory factor: metallothionein-3." Biochemistry. 2001; 40(38): 11433-41. PMID: 11560491
 
 
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