Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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I

Iakoucheva LM, Brown CJ, Lawson JD, Obradovic Z, Dunker AK. "Intrinsic disorder in cell-signaling and cancer-associated proteins." J Mol Biol. 2002; 323(3): 573-84. PMID: 12381310 kedunker@iupui.edu
 
Iakoucheva LM, Dunker AK. "Order, disorder, and flexibility: prediction from protein sequence." Structure. 2003; 11(11): 1316-7. PMID: 14604521
 
Iakoucheva LM, Kimzey AL, Masselon CD, Bruce JE, Garner EC, Brown CJ, Dunker AK, Smith RD, Ackerman EJ. "Identification of intrinsic order and disorder in the DNA repair protein XPA." Protein Sci. 2001; 10(3): 560-71. PMID: 11344324 eric.ackerman@pnl.gov
 
Iakoucheva LM, Kimzey AL, Masselon CD, Smith RD, Dunker AK, Ackerman EJ. "Aberrant mobility phenomena of the DNA repair protein XPA." Protein Sci. 2001; 10(7): 1353-62. PMID: 11420437 eric.ackerman@pnl.gov
 
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, Obradovic Z, Dunker AK. "The importance of intrinsic disorder for protein phosphorylation." Nucleic Acids Res. 2004; 32(3): 1037-49. PMID: 14960716 kedunker@iupui.edu
 
Iakoucheva LM, Walker RK, van Houten B, Ackerman EJ. "Equilibrium and stop-flow kinetic studies of fluorescently labeled DNA substrates with DNA repair proteins XPA and replication protein A." Biochemistry. 2002; 41(1): 131-43. PMID: 11772010 eric.ackerman@pnl.gov
 
Ichiyama S, Oka Y, Haga K, Kojima S, Tateishi Y, Shirakawa M, Haga T. "The structure of the third intracellular loop of the muscarinic acetylcholine receptor M2 subtype." FEBS Lett. 2006; 580(1): 23-6. PMID: 16364317
 
Idicula-Thomas S, Balaji PV. "Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli." Protein Sci. 2005; 14(3): 582-92. PMID: 15689506
 
Idicula-Thomas S, Balaji PV. "Understanding the relationship between the primary structure of proteins and their amyloidogenic propensity: clues from inclusion body formation." Protein Eng Des Sel. 2005; 18(4): 175-80. PMID: 15849216
 
Ikegami T, Kuraoka I, Saijo M, Kodo N, Kyogoku Y, Morikawa K, Tanaka K, Shirakawa M. "Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA." Nat Struct Biol. 1998; 5(8): 701-706. PMID: 9699634
 
Ikegami T, Kuraoka I, Saijo M, Kodo N, Kyogoku Y, Morikawa K, Tanaka K, Shirakawa M. "Resonance assignments, solution structure, and backbone dynamics of the DNA- and RPA-binding domain of human repair factor XPA." J Biochem (Tokyo). 1999; 125(3): 495-506. PMID: 10050037
 
Ikeguchi M, Kato S, Shimizu A, Sugai S. "Molten globule state of equine beta-lactoglobulin." Proteins. 1997; 27(4): 567-75. PMID: 9141136
 
Ikemoto N, Bhatnagar GM, Nagy B, Gergely J. "Interaction of divalent cations with the 55,000-dalton protein component of the sarcoplasmic reticulum. Studies of fluorescence and circular dichroism." J Biol Chem. 1972; 247(23): 7835-7. PMID: 4264137
 
Ikemoto N, Nagy B, Bhatnagar GM, Gergely J. "Studies on a metal-binding protein of the sarcoplasmic reticulum." J Biol Chem. 1974; 249(8): 2357-65. PMID: 4856651
 
Ikemura H, Takagi H, Inouye M. "Requirement of pro-sequence for the production of active subtilisin E in Escherichia coli." J Biol Chem. 1987; 262(16): 7859-64. PMID: 3108260
 
Ikura M, Ames JB. "Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: Two ways to promote multifunctionality." Proc Natl Acad Sci U S A. 2006; 103(5): 1159-64. PMID: 16432210
 
Ikura M, Spera S, Barbato G, Kay LE, Krinks M, Bax A. "Secondary structure and side-chain 1H and 13C resonance assignments of calmodulin in solution by heteronuclear multidimensional NMR spectroscopy." Biochemistry. 1991; 30(38): 9216-28. PMID: 1909892
 
Ilangovan U, Ton-That H, Iwahara J, Schneewind O, Clubb RT. "Structure of sortase, the transpeptidase that anchors proteins to the cell wall of Staphylococcus aureus." Proc Natl Acad Sci U S A. 2001; 98(11): 6056-61. PMID: 11371637
 
Iliopoulos O, Kibel A, Gray S, Kaelin WG Jr. "Tumour suppression by the human von Hippel-Lindau gene product." Nat Med. 1995; 1(8): 822-6. PMID: 7585187
 
Imabayashi F, Aich S, Prasad L, Delbaere LT. "Substrate-free structure of a monomeric NADP isocitrate dehydrogenase: An open conformation phylogenetic relationship of isocitrate dehydrogenase." Proteins. 2006. PMID: 16416443
 
Imai T, Takekiyo T, Kovalenko A, Hirata F, Kato M, Taniguchi Y. "Theoretical study of volume changes associated with the helix-coil transition of an alanine-rich peptide in aqueous solution." Biopolymers. 2005; 79(2): 97-105. PMID: 16001396
 
Imazu H, Sakurai H. "Saccharomyces cerevisiae heat shock transcription factor regulates cell wall remodeling in response to heat shock." Eukaryot Cell. 2005; 4(6): 1050-6. PMID: 15947197
 
Isbell DT, Du S, Schroering AG, Colombo G, Shelling JG. "Metal ion binding to dog osteocalcin studied by 1H NMR spectroscopy." Biochemistry. 1993; 32(42): 11352-11362. PMID: 8218200
 
Ishida H, Borman MA, Ostrander J, Vogel HJ, MacDonald JA. "Solution structure of the calponin homology (CH) domain from the smoothelin-like 1 protein: a unique apocalmodulin-binding mode and the possible role of the C-terminal type-2 CH-domain in smooth muscle relaxation." J. Biol. Chem.. 2008; 283(29): 20569-78. PMID: 18477568
 
Ishii KJ, Coban C, Akira S. "Manifold Mechanisms of Toll-Like Receptor-Ligand Recognition." J Clin Immunol. 2005; 25(6): 511-521. PMID: 16380815
 
Ishikawa T, Ikegami Y, Sano K, Nakagawa H, Sawada S. "Transport Mechanism-Based Drug Molecular Design: Novel Camptothecin Analogues to Circumvent ABCG2-associated Drug Resistance of Human Tumor Cells." Curr Pharm Des. 2006; 12(3): 313-25. PMID: 16454746
 
Ishizaka M, Ohshima Y, Yanagawa H. "Protein anatomy: structure and function of peptide fragments corresponding to the secondary structure units of barnase." J Biochem (Tokyo). 2001; 129(6): 971-7. PMID: 11388914
 
Itoh T. "Primary structure of an acidic ribosomal protein YPA1 from Saccharomyces cerevisiae. Isolation and characterization of peptides and the complete amino acid sequence." Biochim Biophys Acta. 1981; 671(1): 16-24. PMID: 7030402
 
Itoh T, Ishii R, Ebina T, Hanaoka T, Fukushima Y, Mizukami F. "Encapsulation of myoglobin with a mesoporous silicate results in new capabilities." Bioconjug Chem. 2006; 17(1): 236-40. PMID: 16417274
 
Ito T, Yamaguchi T. "Controlled Release of Model Drugs through a Molecular Recognition Ion Gating Membrane in Response to a Specific Ion Signal." Langmuir. 2006; 22(8): 3945-9. PMID: 16584280
 
Ito Y, Yamasaki K, Iwahara J, Terada T, Kamiya A, Shirouzu M, Muto Y, Kawai G, Yokoyama S, Laue ED, Walchli M, Shibata T, Nishimura S, Miyazawa T. "Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein." Biochemistry. 1997; 36(30): 9109-9119. PMID: 9230043
 
Itzhaki LS, Neira JL, Fersht AR. "Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature." J. Mol. Biol.. 1997; 270(1): 89-98. PMID: 9231903
 
Itzhaki LS, Neira JL, Ruiz-Sanz J, de Prat Gay G, Fersht AR. "Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2." J. Mol. Biol.. 1995; 254(2): 289-304. PMID: 7490749
 
Ivanyi-Nagy R, Davidovic L, Khandjian EW, Darlix JL. "Disordered RNA chaperone proteins: from functions to disease." Cell Mol Life Sci. 2005; 62(13): 1409-17. PMID: 15924259
 
Ivanyi-Nagy R, Lavergne JP, Gabus C, Ficheux D, Darlix JL. "RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae." Nucleic Acids Res. 2008; 36(3): 712-725. PMID: 18033802
 
Iverson TM, Alber BE, Kisker C, Ferry JG, Rees DC. "A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila." Biochemistry. 2000; 39(31): 9222-31. PMID: 10924115
 
Iwahara J, Peterson RD, Clubb RT. "Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: a nitrogen-15 relaxation study." Protein Sci. 2005; 14(5): 1140-50. PMID: 15802641
 
Iwaki M, Cotton NP, Quirk PG, Rich PR, Jackson JB. "Molecular recognition between protein and nicotinamide dinucleotide in intact, proton-translocating transhydrogenase studied by ATR-FTIR Spectroscopy." J Am Chem Soc. 2006; 128(8): 2621-9. PMID: 16492047
 
Iwata S, Lee JW, Okada K, Lee JK, Iwata M, Rasmussen B, Link TA, Ramaswamy S, Jap BK. "Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex." Science. 1998; 281(5373): 64-71. PMID: 9651245
 
Izaurralde E, Lewis J, Gamberi C, Jarmolowski A, McGuigan C, Mattaj IW. "A cap-binding protein complex mediating U snRNA export." Nature. 1995; 376(6542): 709-12. PMID: 7651522
 
Izumi T, Mitra S. "Deletion analysis of human AP-endonuclease: minimum sequence required for the endonuclease activity." Carcinogenesis. 1998; 19(3): 525-527. PMID: 9525290
 
 
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