Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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Wade RC, Motiejunas D, Schleinkofer K, Sudarko, Winn PJ, Banerjee A, Kariakin A, Jung C. "Multiple molecular recognition mechanisms. Cytochrome P450--a case study." Biochim Biophys Acta. 2005; 1754(1-2): 239-44. PMID: 16226496
 
Wah DA, Levchenko I, Rieckhof GE, Bolon DN, Baker TA, Sauer RT. "Flexible linkers leash the substrate binding domain of SspB to a peptide module that stabilizes delivery complexes with the AAA+ ClpXP protease." Mol Cell. 2003; 12(2): 355-63. PMID: 14536075
 
Wahlgren NM, Leonil J, Dejmek P, Drakenberg T. "Two-dimensional nuclear magnetic resonance study of the beta-casein peptide 1-25: resonance assignments and secondary structure." Biochim Biophys Acta. 1993; 1202(1): 121-8. PMID: 8373815
 
Wahlstrom JL, Randall MA Jr, Lawson JD, Lyons DE, Siems WF, Crouch GJ, Barr R, Facemyer KC, Cremo CR. "Structural model of the regulatory domain of smooth muscle heavy meromyosin." J Biol Chem. 2003; 278(7): 5123-31. PMID: 12446732
 
Walker LJ, Robson CN, Black E, Gillespie D, Hickson ID. "Identification of residues in the human DNA repair enzyme HAP1 (Ref-1) that are essential for redox regulation of Jun DNA binding." Mol Cell Biol. 1993; 13(9): 5370-5376. PMID: 8355688
 
Walter J, Steigemann W, Singh TP, Bartunik H, Bode W, Huber R. "On the Disordered Activation Domain in Trypsinogen. Chemical Labelling and Low-Temperature Crystallography." Acta Crystallographica, Section B. 1982; 38(5): 1462–1472.
 
Walter S. "Structure and function of the GroE chaperone." Cell Mol Life Sci. 2002; 59(10): 1589-97. PMID: 12475168
 
Walters KJ, Lech PJ, Goh AM, Wang Q, Howley PM. "DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a." Proc Natl Acad Sci U S A. 2003; 100(22): 12694-12699. PMID: 14557549 walte048@umn.edu
 
Wang BB, Brendel V. "Molecular characterization and phylogeny of U2AF35 homologs in plants." Plant Physiol. 2006. PMID: 16407443
 
Wang C, Li C, Ji X, Orbulescu J, Xu J, Leblanc RM. "Peptidolipid as binding site of acetylcholinesterase: molecular recognition of paraoxon in langmuir films." Langmuir. 2006; 22(5): 2200-4. PMID: 16489807
 
Wang D, Villasante A, Lewis SA, Cowan NJ. "The mammalian beta-tubulin repertoire: hematopoietic expression of a novel, heterologous beta-tubulin isotype." J Cell Biol. 1986; 103(5): 1903-10. PMID: 3782288
 
Wang, D. Z. Ray, P. Boothby, M. "Interleukin 4-inducible phosphorylation of HMG-I(Y) is inhibited by rapamycin." J Biol Chem. 1995; 270(39): 22924-22932. PMID: 7559428
 
Wang GG, Song J, Wang Z, Dormann HL, Casadio F, Li H, Luo JL, Patel DJ, Allis CD. "Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger." Nature. 2009; 459(7248): 847-51. PMID: 19430464
 
Wang GL, Jiang BH, Rue EA, Semenza GL. "Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension." Proc Natl Acad Sci U S A. 1995; 92(12): 5510-4. PMID: 7539918
 
Wang G, Wylie GP, Twigg PD, Caspar DL, Murphy JR, Logan TM. "Solution structure and peptide binding studies of the C-terminal src homology 3-like domain of the diphtheria toxin repressor protein." Proc Natl Acad Sci U S A. 1999; 96(11): 6119-24. PMID: 10339551
 
Wang H, Cao R, Ke CF, Liu Y, Wada T, Inoue Y. "Diastereomeric molecular recognition and binding behavior of bile acids by L/D-tryptophan-modified beta-cyclodextrins." J Org Chem. 2005; 70(22): 8703-11. PMID: 16238298
 
Wang H, Chong S. "Visualization of coupled protein folding and binding in bacteria and purification of the heterodimeric complex." Proc Natl Acad Sci U S A. 2003; 100(2): 478-83. PMID: 12515863
 
Wang HY, Tao J, Shumay E, Malbon CC. "G-protein-coupled receptor-associated A-kinase anchoring proteins: AKAP79 and AKAP250 (gravin)." Eur J Cell Biol. 2006. PMID: 16442664
 
Wang J, Zhang Z, Liu H, Shi Y. "Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model." Phys Rev E Stat Nonlin Soft Matter Phys. 2003; 67(6 Pt 1): 061903. PMID: 16241257
 
Wang L, Colon W. "Urea-induced denaturation of apolipoprotein serum amyloid A reveals marginal stability of hexamer." Protein Sci. 2005; 14(7): 1811-7. PMID: 15937280 colonw@rpi.edu
 
Wang L, Tan W. "Multicolor FRET silica nanoparticles by single wavelength excitation." Nano Lett. 2006; 6(1): 84-8. PMID: 16402792
 
Wang Q, Bergeron J, Mabrouk T, Lemay G. "Site-directed mutagenesis of the double-stranded RNA binding domain of bacterially-expressed sigma 3 reovirus protein." Virus Res. 1996; 41(2): 141-51. PMID: 8738173
 
Wang Q, Huang X, Nakamura A, Burchard W, Hallett FR. "Molecular characterisation of soybean polysaccharides: an approach by size exclusion chromatography, dynamic and static light scattering methods." Carbohydr Res. 2005; 340(17): 2637-44. PMID: 16199020
 
Wang S, Schaefer HF 3rd. "The small planarization barriers for the amino group in the nucleic acid bases." J Chem Phys. 2006; 124(4): 044303. PMID: 16460158
 
Wang S, Trumble WR, Liao H, Wesson CR, Dunker AK, Kang CH. "Crystal structure of calsequestrin from rabbit skeletal muscle sarcoplasmic reticulum." Nat Struct Biol. 1998; 5(6): 476-83. PMID: 9628486
 
Wang TN, Qian X, Granick MS, Solomon MP, Rothman VL, Berger DH, Tuszynski GP. "Thrombospondin-1 (TSP-1) promotes the invasive properties of human breast cancer." J Surg Res. 1996; 63(1): 39-43. PMID: 8661169
 
Wang TN, Qian XH, Granick MS, Solomon MP, Rothman VL, Berger DH, Tuszynski GP. "Inhibition of breast cancer progression by an antibody to a thrombospondin-1 receptor." Surgery. 1996; 120(2): 449-54. PMID: 8751617
 
Wang WK, Bycroft M, Foster NW, Buckle AM, Fersht AR, Chen YW. "Structure of the C-terminal sterile alpha-motif (SAM) domain of human p73 alpha." Acta Crystallogr D Biol Crystallogr. 2001; 57(Pt 4): 545-51. PMID: 11264583
 
Wang W, Wan W, Stachiw A, Li AD. "Foldamers with hybrid biological and synthetic sequences as selective DNA fluorescent probes." Biochemistry. 2005; 44(32): 10751-6. PMID: 16086577
 
Wang X, Li MX, Sykes BD. "Structure of the regulatory N-domain of human cardiac troponin C in complex with human cardiac troponin I147-163 and bepridil." J Biol Chem. 2002; 277(34): 31124-31133. PMID: 12060657
 
Wang X, Ye Y, Lencer W, Hansen TH. "The viral E3 ubiquitin ligase mK3 uses the Derlin/p97 ERAD pathway to mediate downregulation of MHC-I proteins." J Biol Chem. 2006. PMID: 16446359
 
Wang X, Zhang S, Zhang J, Huang X, Xu C, Wang W, Liu Z, Wu J, Shi Y. "A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR." J Biol Chem. 2009. PMID: 20007319
 
Wang Y, Du X, Miao W, Liang Y. "Molecular recognition of cytosine- and guanine-functionalized nucleolipids in the mixed monolayers at the air-water interface and Langmuir-Blodgett films." J Phys Chem B Condens Matter Mater Surf Interfaces Biophys. 2006; 110(10): 4914-23. PMID: 16526731
 
Wang Y, Filippov I, Richter C, Luo R, Kriwacki RW. "Solution NMR studies of an intrinsically unstructured protein within a dilute, 75 kDa eukaryotic protein assembly; probing the practical limits for efficiently assigning polypeptide backbone resonances." Chembiochem. 2005; 6(12): 2242-6. PMID: 16270364
 
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. "Prediction and functional analysis of native disorder in proteins from the three kingdoms of life." J Mol Biol. 2004; 337(3): 635-45. PMID: 15019783 dtj@cs.ucl.ac.uk
 
Ward SD, Hamdan FF, Bloodworth LM, Siddiqui NA, Li JH, Wess J. "Use of an in Situ Disulfide Cross-Linking Strategy To Study the Dynamic Properties of the Cytoplasmic End of Transmembrane Domain VI of the M(3) Muscarinic Acetylcholine Receptor." Biochemistry. 2006; 45(3): 676-85. PMID: 16411743
 
Warnmark A, Wikstrom A, Wright AP, Gustafsson JA, Hard T. "The N-terminal regions of estrogen receptor alpha and beta are unstructured in vitro and show different TBP binding properties." J Biol Chem. 2001; 276(49): 45939-44. PMID: 11595744
 
Warrand J, Michaud P, Picton L, Muller G, Courtois B, Ralainirina R, Courtois J. "Contributions of intermolecular interactions between constitutive arabinoxylans to the flaxseeds mucilage properties." Biomacromolecules. 2005; 6(4): 1871-6. PMID: 16004423
 
Warren CL, Kratochvil NC, Hauschild KE, Foister S, Brezinski ML, Dervan PB, Phillips GN Jr, Ansari AZ. "Defining the sequence-recognition profile of DNA-binding molecules." Proc Natl Acad Sci U S A. 2006; 103(4): 867-72. PMID: 16418267
 
Watanabe K, Nair P, Labeit D, Kellermayer MS, Greaser M, Labeit S, Granzier H. "Molecular mechanics of cardiac titin's PEVK and N2B spring elements." J Biol Chem. 2002; 277(13): 11549-58. PMID: 11799131
 
Watanabe YS, Fukunishi Y, Nakamura H. "Modelling of third cytoplasmic loop of bovine rhodopsin by multicanonical molecular dynamics." J Mol Graph Model. 2004; 23(1): 59-68. PMID: 15331054
 
Watkins RE, Wisely GB, Moore LB, Collins JL, Lambert MH, Williams SP, Willson TM, Kliewer SA, Redinbo MR. "The human nuclear xenobiotic receptor PXR: structural determinants of directed promiscuity." Science. 2001; 292(5525): 2329-33. PMID: 11408620
 
Watson DC, Dixon GH. "Amino acid sequence homologies between the high-mobility-group proteins, HMG-T from trout testis and HMG-1 and -2 from calf thymus: is the poly-aspartic-glutamic acid polypeptide within the main chain?" Biosci Rep. 1981; 1(2): 167-175. PMID: 6117336
 
Watson DC, Peters EH, Dixon GH. "The purification, characterization and partial sequence determination of a trout testis non-histone protein, HMG-T." Eur J Biochem. 1977; 74(1): 53-60. PMID: 852459
 
Watt K, Jess TJ, Kelly SM, Price NC, McEwan IJ. "Induced alpha-helix structure in the aryl hydrocarbon receptor transactivation domain modulates protein-protein interactions." Biochemistry. 2005; 44(2): 734-43. PMID: 15641800 iain.mcewan@abdn.ac.uk
 
Watts GD, Wymer J, Kovach MJ, Mehta SG, Mumm S, Darvish D, Pestronk A, Whyte MP, Kimonis VE. "Inclusion body myopathy associated with Paget disease of bone and frontotemporal dementia is caused by mutant valosin-containing protein." Nat Genet. 2004; 36(4): 377-81. PMID: 15034582
 
Weathers EA, Paulaitis ME, Woolf TB, Hoh JH. "Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein." FEBS Lett. 2004; 576(3): 348-52. PMID: 15498561
 
Weaver AJ, Sullivan WP, Felts SJ, Owen BA, Toft DO. "Crystal structure and activity of human p23, a heat shock protein 90 co-chaperone." J Biol Chem. 2000; 275(30): 23045-52. PMID: 10811660
 
Wehbi Z, Perez MD, Dalgalarrondo M, Sanchez L, Calvo M, Chobert JM, Haertle T. "Study of ethanol-induced conformational changes of holo and apo alpha-lactalbumin by spectroscopy and limited proteolysis." Mol Nutr Food Res. 2006; 50(1): 34-43. PMID: 16288500
 
Weidler M, Marx UC, Seidel G, Schafer W, Hoffmann E, Esswein A, Rosch P. "The structure of human parathyroid hormone-related protein(1-34) in near-physiological solution." FEBS Lett. 1999; 444(2-3): 239-244. PMID: 10050767
 
Wei J, Liu Y, Bose K, Henry GD, Baleja JD. "Disorder and structure in the Rab11 binding domain of Rab11 family interacting protein 2." Biochemistry. 2009; 48(3): 549-57.
 
Weikl T, Abelmann K, Buchner J. "An unstructured C-terminal region of the Hsp90 co-chaperone p23 is important for its chaperone function." J Mol Biol. 1999; 293(3): 685-91. PMID: 10543959
 
Weinreb PH, Zhen W, Poon AW, Conway KA, Lansbury PT Jr. "NACP, a protein implicated in Alzheimer's disease and learning, is natively unfolded." Biochemistry. 1996; 35(43): 13709-13715. PMID: 8901511
 
Weissenhorn W, Eck MJ, Harrison SC, Wiley DC. "Phosphorylated T cell receptor zeta-chain and ZAP70 tandem SH2 domains form a 1:3 complex in vitro." Eur J Biochem. 1996; 238(2): 440-5. PMID: 8681956
 
Weiss MA, Ellenberger T, Wobbe CR, Lee JP, Harrison SC, Struhl K. "Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA." Nature. 1990; 347(6293): 575-8. PMID: 2145515
 
Weljie AM, Gagné SM, Vogel HJ. "Solution structure and backbone dynamics of the N-terminal region of the calcium regulatory domain from soybean calcium-dependent protein kinase alpha." Biochemistry. 2004; 43(48): 15131-40. PMID: 15568805
 
Welker S, Rudolph B, Frenzel E, Hagn F, Liebisch G, Schmitz G, Scheuring J, Kerth A, Blume A, Weinkauf S, Haslbeck M, Kessler H, Buchner J. "Hsp12 is an intrinsically unstructured stress protein that folds upon membrane association and modulates membrane function." Mol. Cell. 2010; 39(4): 507-20. PMID: 20797624
 
Wellems TE, Howard RJ. "Homologous genes encode two distinct histidine-rich proteins in a cloned isolate of Plasmodium falciparum." Proc Natl Acad Sci U S A. 1986; 83(16): 6065-9. PMID: 3016741
 
Welsch JA, Rossi R, Comanducci M, Granoff DM. "Protective activity of monoclonal antibodies to genome-derived neisserial antigen 1870, a Neisseria meningitidis candidate vaccine." J Immunol. 2004; 172(9): 5606-15. PMID: 15100304
 
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Werten S, Moras D. "A global transcription cofactor bound to juxtaposed strands of unwound DNA." Nat Struct Mol Biol. 2006; 13(2): 181-2. PMID: 16415882
 
Westendorf JJ, Koka S. "Identification of FHOD1-binding proteins and mechanisms of FHOD1-regulated actin dynamics." J Cell Biochem. 2004; 92(1): 29-41. PMID: 15095401
 
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Whitby FG, Luecke H, Kuhn P, Somoza JR, Huete-Perez JA, Phillips JD, Hill CP, Fletterick RJ, Wang CC. "Crystal structure of Tritrichomonas foetus inosine-5'-monophosphate dehydrogenase and the enzyme-product complex." Biochemistry. 1997; 36(35): 10666-74. PMID: 9271497
 
Whitby FG, Phillips JD, Kushner JP, Hill CP. "Crystal structure of human uroporphyrinogen decarboxylase." Embo J. 1998; 17(9): 2463-71. PMID: 9564029
 
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Wickner RB, Taylor KL, Edskes HK, Maddelein ML, Moriyama H, Roberts BT. "Prions of yeast as heritable amyloidoses." J Struct Biol. 2000; 130(2-3): 310-22. PMID: 10940235
 
Wickremasinghe NS, Hafner JH. "Protein crystals as scanned probes for recognition atomic force microscopy." Nano Lett. 2005; 5(12): 2418-21. PMID: 16351189
 
Wick W, Naumann U, Weller M. "Transforming Growth Factor-beta: A Molecular Target for the Future Therapy of Glioblastoma." Curr Pharm Des. 2006; 12(3): 341-9. PMID: 16454748
 
Wieland WH, Lammers A, Schots A, Orzaez DV. "Plant expression of chicken secretory antibodies derived from combinatorial libraries." J Biotechnol. 2006; 122(3): 382-91. PMID: 16448714
 
Wieland WH, Orzaez D, Lammers A, Parmentier HK, Schots A. "Display and selection of chicken IgA Fab fragments." Vet Immunol Immunopathol. 2006; 110(1-2): 129-40. PMID: 16280167
 
Wietzorrek A, Schwarz H, Herrmann C, Braun V. "The genome of the novel phage rtp, with a rosette-like tail tip, is homologous to the genome of phage t1." J Bacteriol. 2006; 188(4): 1419-36. PMID: 16452425
 
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Wilchek M, Bayer EA, Livnah O. "Essentials of biorecognition: the (strept)avidin-biotin system as a model for protein-protein and protein-ligand interaction." Immunol Lett. 2006; 103(1): 27-32. PMID: 16325268
 
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Wissmann R, Baukrowitz T, Kalbacher H, Kalbitzer HR, Ruppersberg JP, Pongs O, Antz C, Fakler B. "NMR structure and functional characteristics of the hydrophilic N terminus of the potassium channel beta-subunit Kvbeta1.1." J Biol Chem. 1999; 274(50): 35521-5. PMID: 10585425
 
Wittelsberger A, Corich M, Thomas BE, Lee BK, Barazza A, Czodrowski P, Mierke DF, Chorev M, Rosenblatt M. "The mid-region of parathyroid hormone (1-34) serves as a functional docking domain in receptor activation." Biochemistry. 2006; 45(7): 2027-34. PMID: 16475791
 
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Wright AT, Anslyn EV. "Differential receptor arrays and assays for solution-based molecular recognition." Chem Soc Rev. 2006; 35(1): 14-28. PMID: 16365639
 
Wu D, Govindasamy L, Lian W, Gu Y, Kukar T, Agbandje-McKenna M, McKenna R. "Structure of human carnitine acetyltransferase. Molecular basis for fatty acyl transfer." J Biol Chem. 2003; 278(15): 13159-65. PMID: 12562770
 
Wu H, Lustbader JW, Liu Y, Canfield RE, Hendrickson WA. "Structure of human chorionic gonadotropin at 2.6 A resolution from MAD analysis of the selenomethionyl protein." Structure. 1994; 2(6): 545-58. PMID: 7922031
 
Wu L, Cooks RG. "Chiral and isomeric analysis by electrospray ionization and sonic spray ionization using the fixed-ligand kinetic method." Eur J Mass Spectrom (Chichester, Eng). 2005; 11(2): 231-42. PMID: 16046808
 
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Wu Y, Vadrevu R, Yang X, Matthews CR. "Specific structure appears at the N terminus in the sub-millisecond folding intermediate of the alpha subunit of tryptophan synthase, a TIM barrel protein." J Mol Biol. 2005; 351(3): 445-52. PMID: 16023136
 
Wyman AJ, Yocum CF. "Structure and activity of the photosystem II manganese-stabilizing protein: role of the conserved disulfide bond." Photosynth Res. 2005; 85(3): 359-72. PMID: 16170637 cyocum@umich.edu
 
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