Bibliography |
This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.
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Saboury AA, Atri MS, Sanati MH, Moosavi-Movahedi AA, Haghbeen K. "Effects of calcium binding on the structure and stability of human growth hormone." Int J Biol Macromol. 2005; 36(5): 305-9. PMID: 16102809 |
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Saboury AA, Atri MS, Sanati MH, Moosavi-Movahedi AA, Hakimelahi GH, Sadeghi M. "A thermodynamic study on the interaction between magnesium ion and human growth hormone." Biopolymers. 2006; 81(2): 120-6. PMID: 16208769 |
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Saecker RM, Record MT Jr. "Protein surface salt bridges and paths for DNA wrapping." Curr Opin Struct Biol. 2002; 12(3): 311-9. PMID: 12127449 |
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Safer D, Sosnick TR, Elzinga M. "Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends." Biochemistry. 1997; 36(19): 5806-16. PMID: 9153421 |
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Safo MK, Mathews I, Musayev FN, di Salvo ML, Thiel DJ, Abraham DJ, Schirch V. "X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with FMN at 1.8 A resolution." Structure Fold Des. 2000; 8(7): 751-62. PMID: 10903950 |
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Safo MK, Musayev FN, Schirch V. "Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme." Acta Crystallogr D Biol Crystallogr. 2005; 61(Pt 5): 599-604. PMID: 15858270 |
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Safo MK, Yang WZ, Corselli L, Cramton SE, Yuan HS, Johnson RC. "The transactivation region of the fis protein that controls site-specific DNA inversion contains extended mobile beta-hairpin arms." Embo J. 1997; 16(22): 6860-73. PMID: 9362499 |
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Saini HK, Fischer D. "Meta-DP: domain prediction meta-server." Bioinformatics. 2005; 21(12): 2917-20. PMID: 15840708 |
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Saitoh E, Isemura S, Sanada K. "Complete amino acid sequence of a basic proline-rich peptide, P-D, from human parotid saliva." J Biochem (Tokyo). 1983; 93(2): 495-502. PMID: 6841349 |
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Sakaguchi A, Ferri S, Sode K. "SocA is a novel periplasmic binding protein for fructosyl amino acid." Biochem Biophys Res Commun. 2005; 336(4): 1074-80. PMID: 16169524 |
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Sakamoto T, Mahara A, Yamagata K, Iwase R, Yamaoka T, Murakami A. "Evaluation of dynamic features of Escherichia coli 16S ribosomal RNA in homogeneous physiological solution." Biophys J. 2005; 89(6): 4122-8. PMID: 16319080 |
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Sakurai Y, Tang B, Rosloniec EF, Stuart JM, Kang AH, Myers LK. "Molecular characterization of an arthritogenic collagen peptide interacting with I-Ar." Immunology. 2006; 117(1): 136-42. PMID: 16423049 |
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Salois D, Menard M, Paquette Y, Manjunath P. "Complementary deoxyribonucleic acid cloning and tissue expression of BSP-A3 and BSP-30-kDa: phosphatidylcholine and heparin-binding proteins of bovine seminal plasma." Biol. Reprod.. 1999; 61(1): 288-97. PMID: 10377061 |
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Samatey FA, Imada K, Nagashima S, Vonderviszt F, Kumasaka T, Yamamoto M, Namba K. "Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling." Nature. 2001; 410(6826): 331-7. PMID: 11268201 |
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Samson S, Britz-McKibbin P. "Enhanced binding and conformational selectivity in affinity capillary electrophoresis using a water-soluble resorcin[4]arene as intrinsic buffer and electrokinetic host." Electrophoresis. 2006. PMID: 16421941 |
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Sanchez de Groot N, Pallares I, Aviles FX, Vendrell J, Ventura S. "Prediction of "hot spots" of aggregation in disease-linked polypeptides." BMC Struct Biol. 2005; 5: 18. PMID: 16197548 |
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Sanchez-Puig N, Veprintsev DB, Fersht AR. "Binding of natively unfolded HIF-1alpha ODD domain to p53." Mol Cell. 2005; 17(1): 11-21. PMID: 15629713 |
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Sanchez-Puig N, Veprintsev DB, Fersht AR. "Human full-length Securin is a natively unfolded protein." Protein Sci. 2005; 14(6): 1410-8. PMID: 15929994 |
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Sanchez R, Pantoja-Uceda D, Prieto J, Diercks T, Marcaida MJ, Montoya G, Campos-Olivas R, Blanco FJ. "Solution structure of human growth arrest and DNA damage 45alpha (Gadd45alpha) and its interactions with proliferating cell nuclear antigen (PCNA) and Aurora A kinase." J. Biol. Chem.. 2010; 285(29): 22196-201. PMID: 20460379 |
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Sancho J, Neira JL, Fersht AR. "An N-terminal fragment of barnase has residual helical structure similar to that in a refolding intermediate." J. Mol. Biol.. 1992; 224(3): 749-58. PMID: 1569554 |
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Sanderson A, Stott K, Stevens TJ, Thomas JO. "Engineering the structural stability and functional properties of the GI domain into the intrinsically unfolded GII domain of the yeast linker histone Hho1p." J Mol Biol. 2005; 349(3): 608-20. PMID: 15878177 |
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Sandor F, Buc M. "Toll-like receptors. III. Biological significance and impact for human medicine." Folia Biol (Praha). 2005; 51(6): 198-203. PMID: 16419615 |
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Santarella RA, Skiniotis G, Goldie KN, Tittmann P, Gross H, Mandelkow EM, Mandelkow E, Hoenger A. "Surface-decoration of microtubules by human tau." J Mol Biol. 2004; 339(3): 539-553. PMID: 15147841 |
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Santiago A, Godsey AC, Hossain J, Zhao LY, Liao D. "Identification of two independent SUMO-interacting motifs in Daxx: evolutionary conservation from Drosophila to humans and their biochemical functions." Cell Cycle. 2009; 8(1): 76-87. PMID: 19106612 |
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Santoro J, González C, Bruix M, Neira JL, Nieto JL, Herranz J, Rico M. "High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy." J. Mol. Biol.. 1993; 229(3): 722-34. PMID: 8381876 |
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Sarkisov L, Van Tassel PR. "Replica Ornstein-Zernike theory of adsorption in a templated porous material: interaction site systems." J Chem Phys. 2005; 123(16): 164706. PMID: 16268721 |
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Sarver RW Jr, Friedman AR, Thamann TJ. "Spectroscopic studies on the conformational transitions of a bovine growth hormone releasing factor analog." Spectrochim Acta A Mol Biomol Spectrosc. 1997; 53A(11): 1889-900. PMID: 9375414 |
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Sasahara K, McPhie P, Minton AP. "Effect of dextran on protein stability and conformation attributed to macromolecular crowding." J Mol Biol. 2003; 326(4): 1227-37. PMID: 12589765 |
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Satheshkumar PS, Gayathri P, Prasad K, Savithri HS. ""Natively unfolded" VPg is essential for Sesbania mosaic virus serine protease activity." J Biol Chem. 2005; 280(34): 30291-300. PMID: 15944159 |
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Sauve S, Tremblay L, Lavigne P. "The NMR solution structure of a mutant of the Max b/HLH/LZ free of DNA: insights into the specific and reversible DNA binding mechanism of dimeric transcription factors." J Mol Biol. 2004; 342(3): 813-32. PMID: 15342239 |
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Savvides SN, Raghunathan S, Futterer K, Kozlov AG, Lohman TM, Waksman G. "The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA." Protein Sci. 2004; 13(7): 1942-7. PMID: 15169953 |
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Sawant PD, Watson GS, Nicolau D Jr, Myhra S, Nicolau DV. "Hierarchy of DNA immobilization and hybridization on poly-L-lysine using an atomic force microscopy study." J Nanosci Nanotechnol. 2005; 5(6): 951-7. PMID: 16060159 |
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Sawaya MR, Kraut J. "Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence." Biochemistry. 1997; 36(3): 586-603. PMID: 9012674 |
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Sawicki MW, Erman M, Puranen T, Vihko P, Ghosh D. "Structure of the ternary complex of human 17beta-hydroxysteroid dehydrogenase type 1 with 3-hydroxyestra-1,3,5,7-tetraen-17-one (equilin) and NADP+." Proc Natl Acad Sci U S A. 1999; 96(3): 840-845. PMID: 9927655 |
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Saxena AM, Udgaonkar JB, Krishnamoorthy G. "Characterization of intra-molecular distances and site-specific dynamics in chemically unfolded barstar: evidence for denaturant-dependent non-random structure." J Mol Biol. 2006; 359(1): 174-89. PMID: 16603185 |
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Scalley ML, Nauli S, Gladwin ST, Baker D. "Structural transitions in the protein L denatured state ensemble." Biochemistry. 1999; 38(48): 15927-15935. PMID: 10625459 |
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Scapigliati G, Costantini S, Colonna G, Facchiano A, Buonocore F, Bossu P, Cunningham C, Holland JW, Secombes CJ. "Modelling of fish interleukin-1 and its receptor." Dev Comp Immunol. 2004; 28(5): 429-41. PMID: 15062642 |
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Schaefer C, Schlessinger A, Rost B. "Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be." Bioinformatics. . PMID: 20081223 |
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Schafmeister CE, LaPorte SL, Miercke LJ, Stroud RM. "A designed four helix bundle protein with native-like structure." Nat Struct Biol. 1997; 4(12): 1039-46. PMID: 9406555 |
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Schedlbauer A, Gandini R, Kontaxis G, Paulmichl M, Furst J, Konrat R. "The C-terminus of ICln is Natively Disordered but Displays Local Structural Preformation." Cell. Physiol. Biochem.. 2011; 28(6): 1203-10. PMID: 22179008 |
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Scheele U, Alves J, Frank R, Düwel M, Kalthoff C, Ungewickell E.
Scheele U, Alves J, Frank R, Düwel M, Kalthoff C, Ungewickell E. "Molecular and functional characterization of clathrin- and AP-2 binding determinants within a disordered domain of auxilin." J Biol Chem. 2003; 278(28): 25357-25368. PMID: 12732633 |
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Scheibel T, Lindquist SL. "The role of conformational flexibility in prion propagation and maintenance for Sup35p." Nat Struct Biol. 2001; 8(11): 958-62. PMID: 11685242 |
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Schiering N, Knapp S, Marconi M, Flocco MM, Cui J, Perego R, Rusconi L, Cristiani C. "Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-Met and its complex with the microbial alkaloid K-252a." Proc Natl Acad Sci U S A. 2003; 100(22): 12654-9. PMID: 14559966 |
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Schiffer CA, Clifton IJ, Davisson VJ, Santi DV, Stroud RM. "Crystal structure of human thymidylate synthase: a structural mechanism for guiding substrates into the active site." Biochemistry. 1995; 34(50): 16279-87. PMID: 8845352 |
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Schirle NT, MacRae IJ. "The crystal structure of human Argonaute2." Science. 2012; 336(6084): 1037-40. PMID: 22539551 |
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Schlessinger A, Ofran Y, Yachdav G, Rost B. "Epitome: database of structure-inferred antigenic epitopes." Nucleic Acids Res. 2006; 34(Database issue): D777-80. PMID: 16381978 |
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Schlessinger A, Rost B. "Protein flexibility and rigidity predicted from sequence." Proteins. 2005; 61(1): 115-26. PMID: 16080156 rost@cubic.bioc.columbia.edu |
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Schmitz ML, Baeuerle PA. "The p65 subunit is responsible for the strong transcription activating potential of NF-kappa B." Embo J. 1991; 10(12): 3805-3817. PMID: 1935902 |
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Schmitz ML, dos Santos Silva MA, Altmann H, Czisch M, Holak TA, Baeuerle PA. "Structural and functional analysis of the NF-kappa B p65 C terminus. An acidic and modular transactivation domain with the potential to adopt an alpha-helical conformation." J Biol Chem. 1994; 269(41): 25613-25620. PMID: 7929265 |
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Schmitz ML, dos Santos Silva MA, Baeuerle PA. "Transactivation domain 2 (TA2) of p65 NF-kappa B. Similarity to TA1 and phorbol ester-stimulated activity and phosphorylation in intact cells." J Biol Chem. 1995; 270(26): 15576-15584. PMID: 7797554 |
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Schnell JR, Dyson HJ, Wright PE. "Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase." Biochemistry. 2004; 43(2): 374-83. PMID: 14717591 |
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Schoeler B, Delorme N, Doench I, Sukhorukov GB, Fery A, Glinel K. "Polyelectrolyte films based on polysaccharides of different conformations: effects on multilayer structure and mechanical properties." Biomacromolecules. 2006; 7(6): 2065-71. PMID: 16768435 |
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Schoenauer R, Bertoncini P, Machaidze G, Aebi U, Perriard JC, Hegner M, Agarkova I. "Myomesin is a molecular spring with adaptable elasticity." J Mol Biol. 2005; 349(2): 367-79. PMID: 15890201 irina.agarkova@cell.biol.ethz.ch |
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Schonichen A, Alexander M, Gasteier JE, Cuesta FE, Fackler OT, Geyer M. "Biochemical characterization of the diaphanous auto-regulatory interaction in the Formin-homology protein FHOD1." J Biol Chem. 2006; 281(8): 5084-5093. PMID: 16361249 |
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Schramm MP, Rebek J Jr. "Moving Targets: Recognition of Alkyl Groups." Chemistry. 2006. PMID: 16739157 |
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Schuermann JP, Prewitt SP, Davies C, Deutscher SL, Tanner JJ. "Evidence for structural plasticity of heavy chain complementarity-determining region 3 in antibody-ssDNA recognition." J Mol Biol. 2005; 347(5): 965-78. PMID: 15784256 tannerjj@missouri.edu |
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Schug KA, Lindner W. "Chiral molecular recognition for the detection and analysis of enantiomers by mass spectrometric methods." J Sep Sci. 2005; 28(15): 1932-55. PMID: 16276784 |
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Schug KA, Maier NM, Lindner W. "Deuterium isotope effects observed during competitive binding chiral recognition electrospray ionization-mass spectrometry of cinchona alkaloid-based systems." J Mass Spectrom. 2006; 41(2): 157-161. PMID: 16421872 |
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Schulte A, Czudnochowski N, Barboric M, Schonichen A, Blazek D, Peterlin BM, Geyer M. "Identification of a cyclin T-binding domain in Hexim1 and biochemical analysis of its binding competition with HIV-1 Tat." J Biol Chem. 2005; 280(26): 24968-77. PMID: 15855166 |
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Schwarz-Linek U, Hook M, Potts JR. "The molecular basis of fibronectin-mediated bacterial adherence to host cells." Mol Microbiol. 2004; 52(3): 631-41. PMID: 15101971 |
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Schwarz-Linek U, Pilka ES, Pickford AR, Kim JH, Hook M, Campbell ID, Potts JR. "High affinity streptococcal binding to human fibronectin requires specific recognition of sequential F1 modules." J Biol Chem. 2004; 279(37): 39017-25. PMID: 15247227 |
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Scolnik Y, Portnaya I, Cogan U, Tal S, Haimovitz R, Fridkin M, Elitzur AC, Deamer DW, Shinitzky M. "Subtle differences in structural transitions between poly-L- and poly-D-amino acids of equal length in water." Phys Chem Chem Phys. 2006; 8(3): 333-9. PMID: 16482275 |
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Segelke BW, Forstner M, Knapp M, Trakhanov SD, Parkin S, Newhouse YM, Bellamy HD, Weisgraber KH, Rupp B. "Conformational flexibility in the apolipoprotein E amino-terminal domain structure determined from three new crystal forms: implications for lipid binding." Protein Sci. 2000; 9(5): 886-97. PMID: 10850798 |
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Seki A, Duffy HS, Coombs W, Spray DC, Taffet SM, Delmar M. "Modifications in the biophysical properties of connexin43 channels by a peptide of the cytoplasmic loop region." Circ Res. 2004; 95(4): e22-8. PMID: 15284189 |
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Severson W, Xu X, Kuhn M, Senutovitch N, Thokala M, Ferron F, Longhi S, Canard B, Jonsson CB. "Essential amino acids of the hantaan virus N protein in its interaction with RNA." J Virol. 2005; 79(15): 10032-9. PMID: 16014963 jonsson@sri.org |
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Shanmugam G, Polavarapu PL, Hallgas B, Majer Z. "Effect of D-amino acids at Asp23 and Ser26 residues on the conformational preference of Abeta20-29 peptides." Biochem Biophys Res Commun. 2005; 335(3): 712-22. PMID: 16091285 |
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Shenkarev ZO, Finkina EI, Nurmukhamedova EK, Balandin SV, Mineev KS, Nadezhdin KD, Yakimenko ZA, Tagaev AA, Temirov YV, Arseniev AS, Ovchinnikova TV. "Isolation, structure elucidation, and synergistic antibacterial activity of a novel two-component lantibiotic lichenicidin from Bacillus licheniformis VK21." 2010. PMID: 20578714 |
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Shepard LA, Heuck AP, Hamman BD, Rossjohn J, Parker MW, Ryan KR, Johnson AE, Tweten RK. "Identification of a membrane-spanning domain of the thiol-activated pore-forming toxin Clostridium perfringens perfringolysin O: an alpha-helical to beta-sheet transition identified by fluorescence spectroscopy." Biochemistry. 1998; 37(41): 14563-74. PMID: 9772185 |
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Shibata N, Masuda J, Tobimatsu T, Toraya T, Suto K, Morimoto Y, Yasuoka N. "A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase." Structure Fold Des. 1999; 7(8): 997-1008. PMID: 10467140 |
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Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K, Wakatsuki S. "Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport." Nat Struct Biol. 2003; 10(5): 386-93. PMID: 12679809 |
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Shibue T, Taniguchi T. "BH3-only proteins: Integrated control point of apoptosis." Int J Cancer. 2006; 119(9): 2036-43. PMID: 16572413 |
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Shimizu N, Guo J, Gardella TJ. "Parathyroid hormone (PTH)-(1-14) and -(1-11) analogs conformationally constrained by alpha-aminoisobutyric acid mediate full agonist responses via the juxtamembrane region of the PTH-1 receptor." J Biol Chem. 2001; 276(52): 49003-12. PMID: 11604398 |
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Shi Z, Chen K, Liu Z, Sosnick TR, Kallenbach NR. "PII structure in the model peptides for unfolded proteins: studies on ubiquitin fragments and several alanine-rich peptides containing QQQ, SSS, FFF, and VVV." Proteins. 2006; 63(2): 312-21. PMID: 16362932 |
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Shojania S, Henry GD, Chen VC, Vo TN, Perreault H, O'Neil JD. "High yield expression and purification of HIV-1 Tat(1-72) for structural studies." J Virol Methods. 2009. PMID: 19941902 |
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Shojania S, O'Neil JD. "HIV-1 Tat is a natively unfolded protein: the solution conformation and dynamics of reduced HIV-1 Tat-(1-72) by NMR spectroscopy." J Biol Chem. 2006; 281(13): 8347-56. PMID: 16423825 |
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