Bibliography

This bibliography includes all the papers referenced by DisProt, papers that have cited several key references on disordered proteins, and additional papers found by key word searches. The list is sorted by the first author's last name. Click here to see the distribution per year of the papers in the bibliography.
Last update on June 23rd, 2006. Total number of papers in this bibliography: 2785.

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J

Jaakola VP, Prilusky J, Sussman JL, Goldman A. "G protein-coupled receptors show unusual patterns of intrinsic unfolding." Protein Eng Des Sel. 2005; 18(2): 103-10. PMID: 15790574
 
Jaakola VP, Vainio M, Sen S, Rehn M, Heimo H, Scheinin M, Goldman A. "Intracellularly truncated human alpha2B-adrenoceptors: stable and functional GPCRs for structural studies." J Recept Signal Transduct Res. 2005; 25(2): 99-124. PMID: 16149769
 
Jacks A, Babon J, Kelly G, Manolaridis I, Cary PD, Curry S, Conte MR. "Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element." Structure (Camb). 2003; 11(7): 833-43. PMID: 12842046 sasi.conte@kcl.ac.uk
 
Jackson LK, Brooks HB, Osterman AL, Goldsmith EJ, Phillips MA. "Altering the reaction specificity of eukaryotic ornithine decarboxylase." Biochemistry. 2000; 39(37): 11247-11257. PMID: 10985770
 
Jacobs DJ, Livesay DR, Hules J, Tasayco ML. "Elucidating quantitative stability/flexibility relationships within thioredoxin and its fragments using a distance constraint model." J Mol Biol. 2006; 358(3): 882-904. PMID: 16542678
 
Jacobs DM, Lipton AS, Isern NG, Daughdrill GW, Lowry DF, Gomes X, Wold MS. "Human replication protein A: global fold of the N-terminal RPA-70 domain reveals a basic cleft and flexible C-terminal linker." J Biomol NMR. 1999; 14(4): 321-31. PMID: 10526407
 
Jacobs MD, Harrison SC. "Structure of an IkappaBalpha/NF-kappaB complex." Cell. 1998; 95(6): 749-758. PMID: 9865693
 
Jacobson KA, Costanzi S, Ivanov AA, Tchilibon S, Besada P, Gao ZG, Maddileti S, Harden TK. "Structure activity and molecular modeling analyses of ribose- and base-modified uridine 5'-triphosphate analogues at the human P2Y2 and P2Y4 receptors." Biochem Pharmacol. 2006; 71(4): 540-9. PMID: 16359641
 
Jacobson KA, Gao ZG. "Adenosine receptors as therapeutic targets." Nat Rev Drug Discov. 2006; 5(3): 247-64. PMID: 16518376
 
Jaffray E, Wood KM, Hay RT. "Domain organization of I kappa B alpha and sites of interaction with NF-kappa B p65." Mol Cell Biol. 1995; 15(4): 2166-72. PMID: 7891711
 
Jagadish MN, Tellam JT, Macaulay SL, Gough KH, James DE, Ward CW. "Novel isoform of syntaxin 1 is expressed in mammalian cells." Biochem J. 1997; 321 ( Pt 1): 151-156. PMID: 9003414
 
Jager S, Rasched G, Kornreich-Leshem H, Engeser M, Thum O, Famulok M. "A versatile toolbox for variable DNA functionalization at high density." J Am Chem Soc. 2005; 127(43): 15071-82. PMID: 16248646
 
Jakob CG, Lewinski K, Kuciel R, Ostrowski W, Lebioda L. "Crystal structure of human prostatic acid phosphatase ." Prostate. 2000; 42(3): 211-8. PMID: 10639192
 
Jakobsen BK, Pelham HR. "A conserved heptapeptide restrains the activity of the yeast heat shock transcription factor." Embo J. 1991; 10(2): 369-75. PMID: 1899375
 
James LC, Roversi P, Tawfik DS. "Antibody multispecificity mediated by conformational diversity." Science. 2003; 299(5611): 1362-7. PMID: 12610298 tawfik@weizmann.ac.il
 
James LC, Tawfik DS. "Conformational diversity and protein evolution--a 60-year-old hypothesis revisited." Trends Biochem Sci. 2003; 28(7): 361-8. PMID: 12878003 tawfik@weizmann.ac.il
 
James LC, Tawfik DS. "Structure and kinetics of a transient antibody binding intermediate reveal a kinetic discrimination mechanism in antigen recognition." Proc Natl Acad Sci U S A. 2005; 102(36): 12730-5. PMID: 16129832 tawfik@weizmann.ac.il
 
Jancarik J, Kim SH. "Sparse matrix sampling: a screening method for crystallization of proteins." J Appl Cryst. 1991; 24(Pt. 4): 409-11.
 
Jandle S, Meyer R. "Stringent and relaxed recognition of oriT by related systems for plasmid mobilization: implications for horizontal gene transfer." J Bacteriol. 2006; 188(2): 499-506. PMID: 16385040
 
Janes PW, Saha N, Barton WA, Kolev MV, Wimmer-Kleikamp SH, Nievergall E, Blobel CP, Himanen JP, Lackmann M, Nikolov DB. "Adam meets Eph: an ADAM substrate recognition module acts as a molecular switch for ephrin cleavage in trans." Cell. 2005; 123(2): 291-304. PMID: 16239146
 
Jansen GA, Ofman R, Ferdinandusse S, Ijlst L, Muijsers AO, Skjeldal OH, Stokke O, Jakobs C, Besley GT, Wraith JE, Wanders RJ. "Refsum disease is caused by mutations in the phytanoyl-CoA hydroxylase gene." Nat Genet. 1997; 17(2): 190-3. PMID: 9326940
 
Jarroux N, Guegan P, Cheradame H, Auvray L. "High conversion synthesis of pyrene end functionalized polyrotaxane based on poly(ethylene oxide) and alpha-cyclodextrins." J Phys Chem B Condens Matter Mater Surf Interfaces Biophys. 2005; 109(50): 23816-22. PMID: 16375366
 
Jaya N, Garcia V, Vierling E. "Substrate binding site flexibility of the small heat shock protein molecular chaperones." Proc Natl Acad Sci U S A. 2009; 106(37): 15604-9. PMID: 19717454
 
Jeganathan S, von Bergen M, Brutlach H, Steinhoff HJ, Mandelkow E. "Global hairpin folding of tau in solution." Biochemistry. 2006; 45(7): 2283-93. PMID: 16475817 mand@mpasmb.desy.de
 
Jensen LJ, Skovgaard M, Sicheritz-Ponten T, Jorgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D. "Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome." BMC Genomics. 2003; 4(1): 12. PMID: 12697059
 
Jensen MR, Salmon L, Nodet G, Blackledge M. "Defining Conformational Ensembles of Intrinsically Disordered and Partially Folded Proteins Directly from Chemical Shifts." J Am Chem Soc. . PMID: 20063887
 
Jenster G, van der Korput HA, Trapman J, Brinkmann AO. "Identification of two transcription activation units in the N-terminal domain of the human androgen receptor." J Biol Chem. 1995; 270(13): 7341-6. PMID: 7706276
 
Jeong L, Lee KY, Liu JW, Park WH. "Time-resolved structural investigation of regenerated silk fibroin nanofibers treated with solvent vapor." Int J Biol Macromol. 2006; 38(2): 140-4. PMID: 16545448
 
Jeyakanthan J, Drevland RM, Gayathri DR, Velmurugan D, Shinkai A, Kuramitsu S, Yokoyama S, Graham DE. "Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit." Biochemistry. 2010; 49(12): 2687-2696. PMID: 20170198
 
Jha BK, Mitra N, Rana R, Surolia A, Salunke DM, Datta K. "pH and cation-induced thermodynamic stability of human hyaluronan binding protein 1 regulates its hyaluronan affinity." J Biol Chem. 2004; 279(22): 23061-72. PMID: 15004022
 
Jiang H, Smith BD. "Dynamic molecular recognition on the surface of vesicle membranes." Chem Commun (Camb). 2006: 1407-9. PMID: 16550282
 
Jiang Y, Yan YB, Zhou HM. "Polyvinylpyrrolidone 40 assists the refolding of bovine carbonic anhydrase B by accelerating the refolding of the first molten globule intermediate." J Biol Chem. 2006; 281(14): 9058-65. PMID: 16459336
 
Jiang Y, Yu VC, Buchholz F, O'Connell S, Rhodes SJ, Candeloro C, Xia YR, Lusis AJ, Rosenfeld MG. "A novel family of Cys-Cys, His-Cys zinc finger transcription factors expressed in developing nervous system and pituitary gland." J Biol Chem. 1996; 271(18): 10723-10730. PMID: 8631881
 
Jimenez JL. "Does structural and chemical divergence play a role in precluding undesirable protein interactions?" Proteins. 2005; 59(4): 757-64. PMID: 15822102 jlj@sanger.ac.uk
 
Jimenez MA, Evangelio JA, Aranda C, Lopez-Brauet A, Andreu D, Rico M, Lagos R, Andreu JM, Monasterio O. "Helicity of alpha(404-451) and beta(394-445) tubulin C-terminal recombinant peptides." Protein Sci. 1999; 8(4): 788-799. PMID: 10211825
 
Jing W, Hunter HN, Tanabe H, Ouellette AJ, Vogel HJ. "Solution structure of cryptdin-4, a mouse paneth cell alpha-defensin." Biochemistry. 2004; 43(50): 15759-66. PMID: 15595831
 
Jin KS, Kim DY, Rho Y, Le VB, Kwon E, Kim KK, Ree M. "Solution structures of RseA and its complex with RseB." J Synchrotron Radiat. 2008; 15(3): 219-222. PMID: 18421143
 
Jin L, Briggs SL, Chandrasekhar S, Chirgadze NY, Clawson DK, Schevitz RW, Smiley DL, Tashjian AH, Zhang F. "Crystal structure of human parathyroid hormone 1-34 at 0.9-A resolution." J. Biol. Chem.. 2000; 275(35): 27238-44. PMID: 10837469
 
Jin L, Harrison SC. "Crystal structure of human calcineurin complexed with cyclosporin A and human cyclophilin." Proc Natl Acad Sci U S A. 2002; 99(21): 13522-6. PMID: 12357034
 
Ji ZS, Mullendorff K, Cheng IH, Miranda RD, Huang Y, Mahley RW. "Reactivity of apolipoprotein E4 and amyloid beta peptide: lysosomal stability and neurodegeneration." J Biol Chem. 2006; 281(5): 2683-92. PMID: 16298992
 
Jobby MK, Sharma Y. "Calcium-binding crystallins from Yersinia pestis. Characterization of two single betagamma-crystallin domains of a putative exported protein." J Biol Chem. 2005; 280(2): 1209-16. PMID: 15536081
 
Jobby MK, Sharma Y. "Purification of a crystallin domain of Yersinia crystallin from inclusion bodies and its comparison to native protein from the soluble fraction." Biomed Chromatogr. 2006; 20(9): 956-63. PMID: 16470515 jobby@ccmb.res.in
 
Joerger AC, Allen MD, Fersht AR. "Crystal structure of a superstable mutant of human p53 core domain. Insights into the mechanism of rescuing oncogenic mutations." J Biol Chem. 2004; 279(2): 1291-6. PMID: 14534297
 
Johansson J, Gudmundsson GH, Rottenberg ME, Berndt KD, Agerberth B. "Conformation-dependent antibacterial activity of the naturally occurring human peptide LL-37." J Biol Chem. 1998; 273(6): 3718-24. PMID: 9452503
 
Johansson K, Bourhis JM, Campanacci V, Cambillau C, Canard B, Longhi S. "Crystal structure of the measles virus phosphoprotein domain responsible for the induced folding of the C-terminal domain of the nucleoprotein." J Biol Chem. 2003; 278(45): 44567-73. PMID: 12944395
 
Joh D, Speziale P, Gurusiddappa S, Manor J, Hook M. "Multiple specificities of the staphylococcal and streptococcal fibronectin-binding microbial surface components recognizing adhesive matrix molecules." Eur J Biochem. 1998; 258(2): 897-905. PMID: 9874261
 
John M, Briand JP, Schnarr M. "A c-Jun activation domain peptide and its corresponding phosphopeptide have potential to adopt alpha-helical conformation." Pept Res. 1996; 9(2): 71-78. PMID: 8738981
 
John Moult and Eugene Melamud. "Evaluation of Disorder Predictions in CASP5." PROTEINS: Structure, Function, and Genetics. 2003; 53: 561-565.
 
Johnsen L, Dalhus B, Leiros I, Nissen-Meyer J. "1.6-Angstroms crystal structure of EntA-im. A bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin enterocin A." J Biol Chem. 2005; 280(19): 19045-50. PMID: 15753083
 
Johnson BA, Wilson EM, Li Y, Moller DE, Smith RG, Zhou G. "Ligand-induced stabilization of PPARgamma monitored by NMR spectroscopy: implications for nuclear receptor activation." J Mol Biol. 2000; 298(2): 187-94. PMID: 10764590
 
Johnson FB, Parker E, Krasnow MA. "Extradenticle protein is a selective cofactor for the Drosophila homeotics: role of the homeodomain and YPWM amino acid motif in the interaction." Proc Natl Acad Sci U S A. 1995; 92(3): 739-43. PMID: 7846045
 
John SP, Wang T, Steffen S, Longhi S, Schmaljohn CS, Jonsson CB. "Ebola virus VP30 is an RNA binding protein." J Virol. 2007; 81(17): 8967-76. PMID: 17567691
 
Jois PS, Manjunath P. "The N-terminal part of Binder of SPerm 5 (BSP5), which promotes sperm capacitation in bovine species is intrinsically disordered." Biochem. Biophys. Res. Commun.. 2010; 394(4): 1036-41. PMID: 20331968
 
Jones CE, Daly NL, Cobine PA, Craik DJ, Dameron CT. "Structure and metal binding studies of the second copper binding domain of the Menkes ATPase." J Struct Biol. 2003; 143(3): 209-18. PMID: 14572476
 
Jones DT, Ward JJ. "Prediction of disordered regions in proteins from position specific score matrices." Proteins. 2003; 53 Suppl 6: 573-8. PMID: 14579348 dtj@cs.ucl.ac.uk
 
Jones LS, Yazzie B, Middaugh CR. "Polyanions and the proteome." Mol Cell Proteomics. 2004; 3(8): 746-69. PMID: 15143156
 
Jonker HR, Wechselberger RW, Boelens R, Folkers GE, Kaptein R. "Structural properties of the promiscuous VP16 activation domain." Biochemistry. 2005; 44(3): 827-39. PMID: 15654739 g.folkers@chem.uu.nl
 
Jonker HR, Wechselberger RW, Boelens R, Kaptein R, Folkers GE. "The Intrinsically Unstructured Domain of PC4 Modulates the Activity of the Structured Core through Inter- and Intramolecular Interactions." Biochemistry. 2006; 45(15): 5067-81. PMID: 16605275
 
Josefsson E, O'Connell D, Foster TJ, Durussel I, Cox JA. "The binding of calcium to the B-repeat segment of SdrD, a cell surface protein of Staphylococcus aureus." J Biol Chem. 1998; 273(47): 31145-52. PMID: 9813018
 
Joseph D, Petsko GA, Karplus M. "Anatomy of a conformational change: hinged "lid" motion of the triosephosphate isomerase loop." Science. 1990; 249(4975): 1425-8. PMID: 2402636
 
Joshi BV, Jacobson KA. "Purine derivatives as ligands for A3 adenosine receptors." Curr Top Med Chem. 2005; 5(13): 1275-95. PMID: 16305531
 
Ju JH, Maeng JS, Lee DY, Piszczek G, Gelmann EP, Gruschus JM. "Interactions of the acidic domain and SRF interacting motifs with the NKX3.1 homeodomain." Biochem J. 2009; 48(44): 10601-10607. PMID: 19780584
 
Julien JP, Cote F, Beaudet L, Sidky M, Flavell D, Grosveld F, Mushynski W. "Sequence and structure of the mouse gene coding for the largest neurofilament subunit." Gene. 1988; 68(2): 307-314. PMID: 3220257
 
Jung C, Yabe JT, Lee S, Shea TB. "Hypophosphorylated neurofilament subunits undergo axonal transport more rapidly than more extensively phosphorylated subunits in situ." Cell Motil Cytoskeleton. 2000; 47(2): 120-9. PMID: 11013392
 
Junius FK, O'Donoghue SI, Nilges M, Weiss AS, King GF. "High resolution NMR solution structure of the leucine zipper domain of the c-Jun homodimer." J Biol Chem. 1996; 271(23): 13663-13667. PMID: 8662824
 
Junius FK, Weiss AS, King GF. "The solution structure of the leucine zipper motif of the Jun oncoprotein homodimer." Eur J Biochem. 1993; 214(2): 415-424. PMID: 8513791
 
Junop MS, Modesti M, Guarne A, Ghirlando R, Gellert M, Yang W. "Crystal structure of the Xrcc4 DNA repair protein and implications for end joining." Embo J. 2000; 19(22): 5962-70. PMID: 11080143
 
Jun Zhu Stephen CWilnans. "The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization." 2000.
 
Ju T, Goldsmith RB, Chai SC, Maroney MJ, Pochapsky SS, Pochapsky TC. "One protein, two enzymes revisited: a structural entropy switch interconverts the two isoforms of acireductone dioxygenase." J Mol Biol. 2006; 363(4): 823-34. PMID: 16989860
 
 
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